PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022966086.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 371aa MW: 40679.8 Da PI: 6.3673

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022966086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.1	1.6e-07	21	61	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 + C+ ++ + +C+ ++ +lC +C +++H g H+ XP_022966086.1 21 KPCDSCKTAAAAVYCRPDSAFLCLNCDTKIH-GanklasrHD 61 68****99*******************.4466666676 PP
2	zf-B_box	27.7	5.7e-09	62	108	2	42
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ XP_022966086.1 62 RVWMCEVCEQAPAAVMCKADAAALCVTCDADIHSAnplarrHERVPV 108 5789*****************************66899999999986 PP
3	CCT	71	3e-24	298	341	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpRvKGrF+k++ XP_022966086.1 298 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRVKGRFAKRS 341 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MGIEGASVVK GFRGGWGVVN KPCDSCKTAA AAVYCRPDSA FLCLNCDTKI HGANKLASRH 60 DRVWMCEVCE QAPAAVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDSAESLVK 120 PSSVFSFLMP TESNVSGCDG AHHHEEVEVA SWLLSNPPFN SKHVDGPEIK PSADHMFFTE 180 MDSFIDFDYP NPVSAINDSV VPVQTKPLST PVINHTHSPE NCYDIDFCRS KLNSFGYQPQ 240 SLSHSVSSSS LEVGVVPEGN SMSDISYPLG QTISNGTESG LPMSVPGNQA TQLCGIDREA 300 RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRVKGRFAKR SDALSEVDEM YGSAASSEFL 360 TEFQYGVVPT F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MGIEGASVVK GFRGGWGVVN KPCDSCKTAA AAVYCRPDSA FLCLNCDTKI HGANKLASRH  60
DRVWMCEVCE QAPAAVMCKA DAAALCVTCD ADIHSANPLA RRHERVPVEP FFDSAESLVK  120
PSSVFSFLMP TESNVSGCDG AHHHEEVEVA SWLLSNPPFN SKHVDGPEIK PSADHMFFTE  180
MDSFIDFDYP NPVSAINDSV VPVQTKPLST PVINHTHSPE NCYDIDFCRS KLNSFGYQPQ  240
SLSHSVSSSS LEVGVVPEGN SMSDISYPLG QTISNGTESG LPMSVPGNQA TQLCGIDREA  300
RVLRYREKRK NRKFEKTIRY ASRKAYAETR PRVKGRFAKR SDALSEVDEM YGSAASSEFL  360
TEFQYGVVPT F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-108	CO-like family protein