PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022965837.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 328aa MW: 36454.9 Da PI: 7.8221 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.8e-08 | 77 | 101 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f G C+ G++C+FaHg XP_022965837.1 77 FKTRMCAKFKL-GLCRNGANCNFAHG 101 69*********.*************8 PP | |||||||
2 | zf-CCCH | 31 | 4.5e-10 | 136 | 160 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k++lCr f+ + +C+yGdrC+F H XP_022965837.1 136 QKMKLCRKFYNGEECPYGDRCNFLH 160 5999*******66************ PP | |||||||
3 | zf-CCCH | 42.2 | 1.3e-13 | 219 | 245 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++Gd+C+FaHg+ XP_022965837.1 219 WKTKLCTKWEVTGHCPFGDKCHFAHGQ 245 8************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence |
MNFNDIRGSV IPPPLHPYGA NGDATGCWSQ YPRNDLFDTQ SQFEPQLPPF KRARNSEENQ 60 SRVQNGPVNK GINNIFFKTR MCAKFKLGLC RNGANCNFAH GAEDMRQPPP NWQEIVGIRE 120 DDQSVSNWND DQKIIQKMKL CRKFYNGEEC PYGDRCNFLH EDPAKFRDDS GRFRESSAIS 180 IGTTVTPLMN GNDSSYSEPS RAVSCPASDS LRGNGNAFWK TKLCTKWEVT GHCPFGDKCH 240 FAHGQSELQL SLGREGQVSN PALNINPLVV AMEASPSLAA SVATSPLPEG QAKPCLLKWK 300 GPKKINRIYA DWLDDLPLSP TSASKLDV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 7e-95 | C3H family protein |