PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022965837.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 328aa    MW: 36454.9 Da    PI: 7.8221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022965837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-0877101126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C  f   G C+ G++C+FaHg
  XP_022965837.1  77 FKTRMCAKFKL-GLCRNGANCNFAHG 101
                     69*********.*************8 PP

2zf-CCCH314.5e-10136160125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     +k++lCr f+ + +C+yGdrC+F H
  XP_022965837.1 136 QKMKLCRKFYNGEECPYGDRCNFLH 160
                     5999*******66************ PP

3zf-CCCH42.21.3e-13219245127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC  +  tG+C++Gd+C+FaHg+
  XP_022965837.1 219 WKTKLCTKWEVTGHCPFGDKCHFAHGQ 245
                     8************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MNFNDIRGSV IPPPLHPYGA NGDATGCWSQ YPRNDLFDTQ SQFEPQLPPF KRARNSEENQ  60
SRVQNGPVNK GINNIFFKTR MCAKFKLGLC RNGANCNFAH GAEDMRQPPP NWQEIVGIRE  120
DDQSVSNWND DQKIIQKMKL CRKFYNGEEC PYGDRCNFLH EDPAKFRDDS GRFRESSAIS  180
IGTTVTPLMN GNDSSYSEPS RAVSCPASDS LRGNGNAFWK TKLCTKWEVT GHCPFGDKCH  240
FAHGQSELQL SLGREGQVSN PALNINPLVV AMEASPSLAA SVATSPLPEG QAKPCLLKWK  300
GPKKINRIYA DWLDDLPLSP TSASKLDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-95C3H family protein