PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022965787.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 397aa MW: 43626.8 Da PI: 7.3783 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.2 | 5.1e-07 | 150 | 170 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C +f++ G C+ Gd C FaHg XP_022965787.1 150 ACADFRK-GNCNKGDACEFAHG 170 799****.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence |
MMIDEQPNRP NQKLHVPPWA FMEDPASDGY SHSPGSGGSG SGSGSGSGVK CDGCSSGDGY 60 SPFYLQEALA MLQQYLPSKE AEVESDLDVS GREPDSPVDT YSSDQFRMYE FKIKKCLRGR 120 SHDWTECPFA HPGEKARRRD PRKYYYSGTA CADFRKGNCN KGDACEFAHG VFECWLHPAR 180 YRTQPCKDGT SCRRRVCFFA HTPEQLRILP QQSPRSTSSI PSYDGSPLRQ AIEACAKQMP 240 YLSSSGTSTP VSPRIESPPQ SPMFRSLNRP HATSSINEMV ASLRSLQLHK ELGKVQSPSS 300 LWNVQVGSPV FGSPGESSAR SGFGSLPDTP TPPAVRYLDF WDLGCGEEQA MARVESGRDL 360 RAKMLEKLRK ENSVACGDQE KPGGGSVDVG WISELLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29190.1 | 1e-112 | C3H family protein |