PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022965787.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family C3H
Protein Properties Length: 397aa    MW: 43626.8 Da    PI: 7.3783
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022965787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.25.1e-07150170526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C +f++ G C+ Gd C FaHg
  XP_022965787.1 150 ACADFRK-GNCNKGDACEFAHG 170
                     799****.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MMIDEQPNRP NQKLHVPPWA FMEDPASDGY SHSPGSGGSG SGSGSGSGVK CDGCSSGDGY  60
SPFYLQEALA MLQQYLPSKE AEVESDLDVS GREPDSPVDT YSSDQFRMYE FKIKKCLRGR  120
SHDWTECPFA HPGEKARRRD PRKYYYSGTA CADFRKGNCN KGDACEFAHG VFECWLHPAR  180
YRTQPCKDGT SCRRRVCFFA HTPEQLRILP QQSPRSTSSI PSYDGSPLRQ AIEACAKQMP  240
YLSSSGTSTP VSPRIESPPQ SPMFRSLNRP HATSSINEMV ASLRSLQLHK ELGKVQSPSS  300
LWNVQVGSPV FGSPGESSAR SGFGSLPDTP TPPAVRYLDF WDLGCGEEQA MARVESGRDL  360
RAKMLEKLRK ENSVACGDQE KPGGGSVDVG WISELLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-112C3H family protein