PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022965624.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

AP2

Protein Properties

Length: 672aa MW: 72569.4 Da PI: 6.6183

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022965624.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.6	8.7e-15	288	347	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_022965624.1 288 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 347 57*****************666664478446***********************98 PP
2	AP2	46.4	9.6e-15	390	441	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_022965624.1 390 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDTAAIKFRG 441 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MELHQISLTS NTSIYFLSIS FKIPSFFFSS MGSMNWLGFS LSPQEQHSDH HHGGGGGGVG 60 GDGPFTSDNI SGSAVCFDNL PSSYGVYEPF HRNNHSQDWN NMKGLGSAQS SDFSALIETQ 120 QPPKLENFLG HHSFTDHDHA VVYTNASGNY MFQNCSLELP SDPANCGGGK TNDNGNNNGS 180 SIGLSMMKTW LRNQPAPSQA VAKYGGDHDG AVRSGNITNA HSLSLSMNTG PPAAALPLLT 240 ANGGGSGGES SSSDNKQAKS ASAEVDGENG AVEAVPRKSI DTFGQRTSIY RGVTRHRWTG 300 RYEAHLWDNS CRREGQTRKG RQVYLGGYDK EEKAARAYDL AALKYWGSTT TTNFPISDYE 360 KEMEDMKHMT RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG 420 TFSTQEEAAE AYDTAAIKFR GLNAVTNFDM SRYDVKAILE SNTLPIGGAA KRLKDIVHSD 480 IDPQRSDENI TSHLSDGIIT AAPYSGGGWP SFAFHHHPYA FHYPYAATQQ RLWCKQENDA 540 TVAAADNFFP HGGAMDSMDH GVYGGGVSGD GYGGNFLISM AAAGAEAGSS SSNNNGGGLG 600 EIGEVNLFGC SSNVDDPYHA TRSTTNLYDY NNSSHQLPPP TTALQQCNNW LPPARTVCHG 660 GAPPPFTIWN DT

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MELHQISLTS NTSIYFLSIS FKIPSFFFSS MGSMNWLGFS LSPQEQHSDH HHGGGGGGVG  60
GDGPFTSDNI SGSAVCFDNL PSSYGVYEPF HRNNHSQDWN NMKGLGSAQS SDFSALIETQ  120
QPPKLENFLG HHSFTDHDHA VVYTNASGNY MFQNCSLELP SDPANCGGGK TNDNGNNNGS  180
SIGLSMMKTW LRNQPAPSQA VAKYGGDHDG AVRSGNITNA HSLSLSMNTG PPAAALPLLT  240
ANGGGSGGES SSSDNKQAKS ASAEVDGENG AVEAVPRKSI DTFGQRTSIY RGVTRHRWTG  300
RYEAHLWDNS CRREGQTRKG RQVYLGGYDK EEKAARAYDL AALKYWGSTT TTNFPISDYE  360
KEMEDMKHMT RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  420
TFSTQEEAAE AYDTAAIKFR GLNAVTNFDM SRYDVKAILE SNTLPIGGAA KRLKDIVHSD  480
IDPQRSDENI TSHLSDGIIT AAPYSGGGWP SFAFHHHPYA FHYPYAATQQ RLWCKQENDA  540
TVAAADNFFP HGGAMDSMDH GVYGGGVSGD GYGGNFLISM AAAGAEAGSS SSNNNGGGLG  600
EIGEVNLFGC SSNVDDPYHA TRSTTNLYDY NNSSHQLPPP TTALQQCNNW LPPARTVCHG  660
GAPPPFTIWN DT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-131	AP2 family protein