PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022965567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
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Family | C3H | ||||||||
Protein Properties | Length: 929aa MW: 102663 Da PI: 6.0653 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.2 | 8.9e-06 | 549 | 569 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++ + G C+ Gd+CkF+H+ XP_022965567.1 549 YCRHYIK-GRCHEGDKCKFSHD 569 6******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 929 aa Download sequence |
MEDARIEATK LVESKLMFPP HRRSHLKSDT YRTLVRILSP FCGSDDVSLA TEFDPQQLRH 60 AYTSHLKQST VESSGQQFGE DFVRPEIGDS AIETVTVVED GVGMDSLEDG YFHESEVKMN 120 VIKDMSIVER SDNGSAEREL QGASSQENRC VHEESHSDEL EAANMVEGNK VLIDDNSSNK 180 MRSSDQTNCE NDQISPKKFQ EEIVEHQQVM AEQDAVNRAQ NLSMTIFSSE GDNIEEASKH 240 KDNQENILPI EDKGMYQLTE TQPKESKPEG KVCEPCLEME RSHVSSFEVM EVEDGEQCSE 300 KVWGLDLSCL DKEMPFWANE LSKDSEDWAV SMEVDTSEVG HKIVSENIQM DKCLIENEDI 360 EEGEICGDST HEISEDPAVL DEKHSLIQAN GEAKKPDSLF SDIVKYATHE NKEESKQKKS 420 SLDACKHGSM DSVKMVTTII DQNDFMLEEA GYTVKDSRPK RDADSFTARI SNQVPCGQVP 480 SECATGRKEI VSTEKETGAC NKKKRGSCTE GRKERKKIQK RKKRAEKNRK LGVKRLKLLP 540 VTMPKPVVYC RHYIKGRCHE GDKCKFSHDT TPATKSIPCS YFARHSCMKG DDCPFDHQLF 600 KYPCSNFVSK GSCPRGDTCM FSHKILPQEP SNMQNLKTQS KPPVTPDSSD SQRKSNMSGG 660 TKQKPVSVTG PSYAGASCNR TPQGESLPKK TTGSLPIGIS FLSFGKSPDH SSQVKNNDVE 720 RRNSLTQSGL CSVENSSEIS RKIQPQSAPE GISILSFGRT SLRSNSENFA TPSSYNAATI 780 TSGNQTPSAS KTGHDPIELA KKVQMTTSKL TNFFSPMKES MYVKPEGLST IFSRLPGTSM 840 TTGQYSDSSA SSMNKGTPNS AQKALLSTLA FAAKYESMNK GKSSASAGSN DGNKEDRNEK 900 ISGSLKNDQA KASKLLDFLL GVGSKSNLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 502 | 524 | KKKRGSCTEGRKERKKIQKRKKR |
2 | 502 | 527 | KKKRGSCTEGRKERKKIQKRKKRAEK |
3 | 503 | 525 | KKKRGSCTEGRKERKKIQKRKKR |
4 | 515 | 537 | RKKIQKRKKRAEKNRKLGVKRLK |