PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022965565.1

Organism

Cucurbita maxima

Taxonomic ID

3661

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 946aa MW: 104338 Da PI: 6.0655

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022965565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9.1e-06	549	569	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr++ + G C+ Gd+CkF+H+ XP_022965565.1 549 YCRHYIK-GRCHEGDKCKFSHD 569 6****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence
MEDARIEATK LVESKLMFPP HRRSHLKSDT YRTLVRILSP FCGSDDVSLA TEFDPQQLRH 60 AYTSHLKQST VESSGQQFGE DFVRPEIGDS AIETVTVVED GVGMDSLEDG YFHESEVKMN 120 VIKDMSIVER SDNGSAEREL QGASSQENRC VHEESHSDEL EAANMVEGNK VLIDDNSSNK 180 MRSSDQTNCE NDQISPKKFQ EEIVEHQQVM AEQDAVNRAQ NLSMTIFSSE GDNIEEASKH 240 KDNQENILPI EDKGMYQLTE TQPKESKPEG KVCEPCLEME RSHVSSFEVM EVEDGEQCSE 300 KVWGLDLSCL DKEMPFWANE LSKDSEDWAV SMEVDTSEVG HKIVSENIQM DKCLIENEDI 360 EEGEICGDST HEISEDPAVL DEKHSLIQAN GEAKKPDSLF SDIVKYATHE NKEESKQKKS 420 SLDACKHGSM DSVKMVTTII DQNDFMLEEA GYTVKDSRPK RDADSFTARI SNQVPCGQVP 480 SECATGRKEI VSTEKETGAC NKKKRGSCTE GRKERKKIQK RKKRAEKNRK LGVKRLKLLP 540 VTMPKPVVYC RHYIKGRCHE GDKCKFSHDT TPATKSIPCS YFARHSCMKG DDCPFDHQLF 600 KYPCSNFVSK GSCPRGDTCM FSHKILPQEP SNMQNLKTQS KPPVTPDSSD SQRKSNMSGG 660 TKQKPVSVTG PSYAGASCNR TPQGESLPKK TTGSLPIGIS FLSFGKSPDH SSQVKNNDVE 720 RRNSLTQSGL CSVENSSEIS RKIQPQSAPE GISILSFGRT SLRSNSENFA TPSSYNAATI 780 TSGNQTPSAS KTGHDPIELA KKVQMTTSKL TNFFSPVGNC TSNSKVSSDL SVPMKESMYV 840 KPEGLSTIFS RLPGTSMTTG QYSDSSASSM NKGTPNSAQK ALLSTLAFAA KYESMNKGKS 900 SASAGSNDGN KEDRNEKISG SLKNDQAKAS KLLDFLLGVG SKSNLK

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence

MEDARIEATK LVESKLMFPP HRRSHLKSDT YRTLVRILSP FCGSDDVSLA TEFDPQQLRH  60
AYTSHLKQST VESSGQQFGE DFVRPEIGDS AIETVTVVED GVGMDSLEDG YFHESEVKMN  120
VIKDMSIVER SDNGSAEREL QGASSQENRC VHEESHSDEL EAANMVEGNK VLIDDNSSNK  180
MRSSDQTNCE NDQISPKKFQ EEIVEHQQVM AEQDAVNRAQ NLSMTIFSSE GDNIEEASKH  240
KDNQENILPI EDKGMYQLTE TQPKESKPEG KVCEPCLEME RSHVSSFEVM EVEDGEQCSE  300
KVWGLDLSCL DKEMPFWANE LSKDSEDWAV SMEVDTSEVG HKIVSENIQM DKCLIENEDI  360
EEGEICGDST HEISEDPAVL DEKHSLIQAN GEAKKPDSLF SDIVKYATHE NKEESKQKKS  420
SLDACKHGSM DSVKMVTTII DQNDFMLEEA GYTVKDSRPK RDADSFTARI SNQVPCGQVP  480
SECATGRKEI VSTEKETGAC NKKKRGSCTE GRKERKKIQK RKKRAEKNRK LGVKRLKLLP  540
VTMPKPVVYC RHYIKGRCHE GDKCKFSHDT TPATKSIPCS YFARHSCMKG DDCPFDHQLF  600
KYPCSNFVSK GSCPRGDTCM FSHKILPQEP SNMQNLKTQS KPPVTPDSSD SQRKSNMSGG  660
TKQKPVSVTG PSYAGASCNR TPQGESLPKK TTGSLPIGIS FLSFGKSPDH SSQVKNNDVE  720
RRNSLTQSGL CSVENSSEIS RKIQPQSAPE GISILSFGRT SLRSNSENFA TPSSYNAATI  780
TSGNQTPSAS KTGHDPIELA KKVQMTTSKL TNFFSPVGNC TSNSKVSSDL SVPMKESMYV  840
KPEGLSTIFS RLPGTSMTTG QYSDSSASSM NKGTPNSAQK ALLSTLAFAA KYESMNKGKS  900
SASAGSNDGN KEDRNEKISG SLKNDQAKAS KLLDFLLGVG SKSNLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	502	524	KKKRGSCTEGRKERKKIQKRKKR
2	502	527	KKKRGSCTEGRKERKKIQKRKKRAEK
3	503	525	KKKRGSCTEGRKERKKIQKRKKR
4	515	537	RKKIQKRKKRAEKNRKLGVKRLK