PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027185846.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 357aa MW: 39824.6 Da PI: 8.8903

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027185846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.8	1.4e-18	22	106	2	74
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt qe+++Liea+r ++er +++ ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ ++ XP_027185846.1 22 WTVQETMVLIEAKRMDDERRMKRQgdsvggekpggkPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRLADH 106 ************777777664334555556666599***************************************997443 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MHIVMANQGG NNVLRDYRKG NWTVQETMVL IEAKRMDDER RMKRQGDSVG GEKPGGKPAE 60 LRWKWVEDYC WRNGCLRSQN QCNDKWDNLM RDFKKVREYE RRLADHQQQL ITIGESSSER 120 ERSDEKSYWK LEKNERKANN LPSNLLPQIY DALVEVVEKK VQRGSVVGLV GAGGTTASIP 180 NVPPSSAAAL VGQPSSLPPS MQHLPISPPV SALPLPPPVV AQTPVQQQQQ QQHPHTHPFS 240 QQLPTVDSDT SEHSDSPAKR RRRGEGTSGG ASGSESHEVG TAISRSASVI AETIQACEER 300 EERRHRELLS LHERRLQIEE SKAEISRQGI NGLVDAVNKL ANSILALASH KTQSTPK

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MHIVMANQGG NNVLRDYRKG NWTVQETMVL IEAKRMDDER RMKRQGDSVG GEKPGGKPAE  60
LRWKWVEDYC WRNGCLRSQN QCNDKWDNLM RDFKKVREYE RRLADHQQQL ITIGESSSER  120
ERSDEKSYWK LEKNERKANN LPSNLLPQIY DALVEVVEKK VQRGSVVGLV GAGGTTASIP  180
NVPPSSAAAL VGQPSSLPPS MQHLPISPPV SALPLPPPVV AQTPVQQQQQ QQHPHTHPFS  240
QQLPTVDSDT SEHSDSPAKR RRRGEGTSGG ASGSESHEVG TAISRSASVI AETIQACEER  300
EERRHRELLS LHERRLQIEE SKAEISRQGI NGLVDAVNKL ANSILALASH KTQSTPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-56	Trihelix family protein