PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027185825.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 321aa    MW: 37449.4 Da    PI: 9.2133
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027185825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.39.9e-191050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i nk  r vtf kRr+g+ KKA ELS+LC++++++i+f++
  XP_027185825.1 10 MITNKKARRVTFEKRRKGLEKKARELSTLCGVRICLIVFGP 50
                    699************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGRAKARMEM ITNKKARRVT FEKRRKGLEK KARELSTLCG VRICLIVFGP VDDDQTIEPR  60
VWPQNPQEID SLVDSFKKAN LDDRRGRTTD FSFFYQNRKR RAEEELARLR KKNLETKHPT  120
WDEKYDFLSL EELRQFDDLL KEKVDIMKAR VDFMKGTQTY FAETSRNLQY LCRSRNSSTL  180
FEIPQPQPLS SFDQNRHSLD SAFQDSYNYN SMVNPQMMMW MNNGASSSIN APLISYDNCD  240
RRSLVQFNMD PAAAAAAAEH ITSSLGNNAV GNQFCYYVPK MQPMPLYLQY SLQQSRAPTQ  300
MYASQRDENY GFSDFQLMNP K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-20M-type_MADS family protein