PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027185765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23868.8 Da PI: 8.3882 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.6 | 6.8e-46 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh++FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l+ XP_027185765.1 8 PCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHRVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLS 102 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_027185765.1 103 CAKSE 107 99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MASSSNSPCA ACKFLRRKCQ PECVFAPYFP PDQPQKFANV HRVFGASNVT KLLNELQPHQ 60 REDAVNSLAY EADMRLRDPV YGCVGVISLL QHQLRQLQMD LSCAKSELSK YQSLGITSHG 120 LIAAAAAAAT ATTHHHHHPQ NLGINFIGGG GSGREQYYHH QFFPRDQQQV IRAFDGGNNY 180 DASSLLAMNV SASIGQLSQF QHPRAAGGDG RRTPIEPS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 5e-88 | LBD family protein |