PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027185427.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 306aa    MW: 34572.6 Da    PI: 5.4791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027185427.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-142269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
   XP_027185427.1 22 KGLWSPEEDDKLMNYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 69
                     678*******************************************97 PP
2Myb_DNA-binding53.26.8e-1775118146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+el+++++++lG++ W+ Ia++++ gRt++++k++w++
   XP_027185427.1  75 RGAFSPQEEELIIHLHALLGNR-WSQIAARLP-GRTDNEIKNFWNS 118
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MRKPEPSVEK NNMSNSSVKL RKGLWSPEED DKLMNYMLTN GQGCWSDVAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGAFSP QEEELIIHLH ALLGNRWSQI AARLPGRTDN EIKNFWNSTI  120
KKRLKNLSSP NTSDSSSIQE QSMMGMFVDL SSSASSSMHS MALTNMVDPL PMLEQSLSTS  180
GGTSAGSYFD PQSCIRQAAY DNPAFSTGNL EGQRSIFFPP LESGEVERSA ITTTNFVDRN  240
PTSNTVDNRS NMINYYGNNN YIKVENADGF GSYWEAEELR VKEWDLEELM KDASSFPLPD  300
FQKNNW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-63MYB family protein