PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027184145.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 374aa    MW: 41049.2 Da    PI: 3.9366
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027184145.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF442.9e-142270149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie k n  v+fskRr+g++KKAeE     +a+va+++ s+ g+++++
  XP_027184145.1 22 KKIEKKKNLLVSFSKRRAGLFKKAEEYTKKSGAQVAILVQSPGGRFFTF 70
                    689*********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MEENAVILNK RKFGGRRKIQ IKKIEKKKNL LVSFSKRRAG LFKKAEEYTK KSGAQVAILV  60
QSPGGRFFTF GGPDSASVDS ILEQYLAGMM PSSSSSSSAK NGTVVDDQGK SNPVEIEENT  120
MEEEVIEQGL METNQVSDGK ESLLKQLLDN DDLQCFDELE NYMVTMKGLE SEELSQEDDG  180
TNRAADDTIN GDPDSSSLLN PNVNLDYFGG FPVNNDQMIG GAHTAVNDAN PVYFSGLPVT  240
NDFFQEYNEM TRAAADAASS SLLIPKVNLD YFSGLPKNND FFQDDEMARP ADTINGDADP  300
SSLVIPNVNL DYFGGLPMNN DFFQDDEMNR AADAVNGDVD SSSLLIPSVN LDCFGGLPVD  360
FDFDEPSPQY NDWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-13M-type_MADS family protein