PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027183775.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 692aa MW: 75588.7 Da PI: 6.4723

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027183775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.1	3.3e-11	271	327	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g XP_027183775.1 271 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 327 57*****************4444.2455535555.779999************98 PP
2	AP2	46.7	7.9e-15	370	421	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027183775.1 370 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 421 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MASMNNWLGF SLSPQEIPSQ PHQDHSQNTV PRLDTFSSEE LSGTDVSGDC FDLSSHASTI 60 PSLNLPAPFG ILEAFNRNNQ SQDWSFKELN MNSNTSYKTA GSEMSMLMGR ACNNNNHNLE 120 NQEPKLENFL GVGGQNSLHL PSQTVEASSS NGNGTIGLSM IKNWLRNNPS TSQPENKIIN 180 GNDGVVVCSN NAQNLSLSMS TGSQSTSALP LLTAASCSDG EGGGGESSTS DNTNTNKQQN 240 GGIGITSLDS QSGAIEAVPR KSIDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT 300 RKGRQGGYDK EEKAARAYDL AALKYWGTTT TTNFPISNYE KEIEEMKHMT RQEYVASLRR 360 KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR 420 GLNAVTNFEI SRYDVKSILE SSTLPIGGAA KRLKDAEQAE MALDAHRTNN DNLSSHLTDG 480 MSSYGAQHAW PTIAFQQAQP LTMHYPYGQQ QRLWCKQEND SDVSHSFHDL HQLQLGNTHN 540 FLQPSVLHNL MSLDSSSMEH SSSCNSVIYS NGSNDNAAYQ GVGYGSSSSY LLPMSTTVIA 600 EEGSQNQGNG FGENGVKAIG YENMFGSSDP YQTRNFYYHP LPSSNGTLRA GLYDQGSSCN 660 TWVPTGVPTL VARTNNMAVC HGSSTFTVGN DT

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MASMNNWLGF SLSPQEIPSQ PHQDHSQNTV PRLDTFSSEE LSGTDVSGDC FDLSSHASTI  60
PSLNLPAPFG ILEAFNRNNQ SQDWSFKELN MNSNTSYKTA GSEMSMLMGR ACNNNNHNLE  120
NQEPKLENFL GVGGQNSLHL PSQTVEASSS NGNGTIGLSM IKNWLRNNPS TSQPENKIIN  180
GNDGVVVCSN NAQNLSLSMS TGSQSTSALP LLTAASCSDG EGGGGESSTS DNTNTNKQQN  240
GGIGITSLDS QSGAIEAVPR KSIDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQT  300
RKGRQGGYDK EEKAARAYDL AALKYWGTTT TTNFPISNYE KEIEEMKHMT RQEYVASLRR  360
KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  420
GLNAVTNFEI SRYDVKSILE SSTLPIGGAA KRLKDAEQAE MALDAHRTNN DNLSSHLTDG  480
MSSYGAQHAW PTIAFQQAQP LTMHYPYGQQ QRLWCKQEND SDVSHSFHDL HQLQLGNTHN  540
FLQPSVLHNL MSLDSSSMEH SSSCNSVIYS NGSNDNAAYQ GVGYGSSSSY LLPMSTTVIA  600
EEGSQNQGNG FGENGVKAIG YENMFGSSDP YQTRNFYYHP LPSSNGTLRA GLYDQGSSCN  660
TWVPTGVPTL VARTNNMAVC HGSSTFTVGN DT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-125	AP2 family protein