PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027183745.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 20241.1 Da PI: 5.0219 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.8 | 2.8e-41 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C+++Cvlapyfp+++p +f +vhk++Gasn+++ l++lpe++r+d ++s+vyeA ar+rdPvyG++g++++lqqq+ l++ela XP_027183745.1 13 PCAACKSLRRRCSDECVLAPYFPSSEPLRFTIVHKVYGASNIVRRLQELPEHQRSDSINSMVYEAAARIRDPVYGCAGTVTQLQQQILGLQEELA 107 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_027183745.1 108 KAQAE 112 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MESGRRQQNT VYPCAACKSL RRRCSDECVL APYFPSSEPL RFTIVHKVYG ASNIVRRLQE 60 LPEHQRSDSI NSMVYEAAAR IRDPVYGCAG TVTQLQQQIL GLQEELAKAQ AEILNMQCQI 120 ANLVSLIWME MFPSQEQETI SVSGLQQDII HMPEKQPLDD SDTTNGSLEP LCTHEKAMGI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-53 | LBD family protein |