PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027183102.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 587aa MW: 66080.1 Da PI: 6.385

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027183102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.3	2.4e-29	424	508	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+++e++++r k+plWe++s+ m++ gf+rs+k+Ckekwen+nk++kk +e++k+ ++ +tc+yfdql+ XP_027183102.1 424 RWPKAEVEALIQIRSSLEQKFQRPGIKGPLWEQISNSMASMGFQRSAKRCKEKWENINKYFKKSRENAKQC-RKKFKTCQYFDQLD 508 8******************************************************************97.66678******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MGENHQQQPV FSANQSHQYN HQQPYIFQET QNLQTIPDFF HYHHHFQALL QQQRRLQDQL 60 QQCVLGQENV VSTSATTAAV AGNNIRPSVS FFPLNFKPPD LNENITSSKN GGLDDDGSED 120 DLFRRNSAAA AALAMASPHY CWQNQEDSAT AIRQPFWKPL CTNISDGNNN SQDKEVRPEM 180 HQNKYYKSSE DTEQMNSSLE NSKNRLFGEL ESICRSASVA SEANKTGGAS AGNLATTFST 240 CLPITLDKHN TNAGATAAAA AIGHCHDGSE SFSGHEAPVA VVSKNKKRKK LKDELSSMAI 300 FFEGLVHQLM DHQEALHSNF MNAIERLDKE RREREDAWRR QELEKLEQDM AARARERALA 360 SSREASIVSY LEKITGQSIK LPPRNHPSDF QLAMISSGAM NGELSPSTSK VCRDDLSINM 420 TSRRWPKAEV EALIQIRSSL EQKFQRPGIK GPLWEQISNS MASMGFQRSA KRCKEKWENI 480 NKYFKKSREN AKQCRKKFKT CQYFDQLDQL HSKSQLANGG SYSCSSSSEH QAKPNNENQL 540 PNPIEGLVPA RNFRQGEFYC IPSMNVSEEE EEEEGEDGNV DYPDEGD

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MGENHQQQPV FSANQSHQYN HQQPYIFQET QNLQTIPDFF HYHHHFQALL QQQRRLQDQL  60
QQCVLGQENV VSTSATTAAV AGNNIRPSVS FFPLNFKPPD LNENITSSKN GGLDDDGSED  120
DLFRRNSAAA AALAMASPHY CWQNQEDSAT AIRQPFWKPL CTNISDGNNN SQDKEVRPEM  180
HQNKYYKSSE DTEQMNSSLE NSKNRLFGEL ESICRSASVA SEANKTGGAS AGNLATTFST  240
CLPITLDKHN TNAGATAAAA AIGHCHDGSE SFSGHEAPVA VVSKNKKRKK LKDELSSMAI  300
FFEGLVHQLM DHQEALHSNF MNAIERLDKE RREREDAWRR QELEKLEQDM AARARERALA  360
SSREASIVSY LEKITGQSIK LPPRNHPSDF QLAMISSGAM NGELSPSTSK VCRDDLSINM  420
TSRRWPKAEV EALIQIRSSL EQKFQRPGIK GPLWEQISNS MASMGFQRSA KRCKEKWENI  480
NKYFKKSREN AKQCRKKFKT CQYFDQLDQL HSKSQLANGG SYSCSSSSEH QAKPNNENQL  540
PNPIEGLVPA RNFRQGEFYC IPSMNVSEEE EEEEGEDGNV DYPDEGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	290	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-36	Trihelix family protein