PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027182939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | CO-like | ||||||||
Protein Properties | Length: 346aa MW: 38153.6 Da PI: 6.4391 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.8 | 3.8e-07 | 11 | 43 | 4 | 36 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ ++ fC+ ++ +lC C +++H XP_027182939.1 11 KPCDSCKATSASVFCRADSAFLCLACDSKIHAA 43 67******99*********************54 PP | |||||||
2 | zf-B_box | 26.7 | 1.1e-08 | 53 | 98 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC+ C +H+ H++ p+ XP_027182939.1 53 VWVCEVCEQAPASVTCKADAAALCNACDRDIHSAnplarrHERLPI 98 689*****************************66888888998876 PP | |||||||
3 | CCT | 69.7 | 7.4e-24 | 283 | 327 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae XP_027182939.1 283 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 327 9*****************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence |
MGAEGWNLTA KPCDSCKATS ASVFCRADSA FLCLACDSKI HAANKLASRH GRVWVCEVCE 60 QAPASVTCKA DAAALCNACD RDIHSANPLA RRHERLPISP FFDSASAARC TGASDEKCLL 120 DVGSEAEEAE AASWLLPNPN CNKDLEPDSP EYKTADYLFT DMDPYLDMDL ISGDQKPHVM 180 QYQNHHHNHV HQQHNSDGVV PVQNKNDPTH LPGPVVDGFP TYEMDFAGSK SFMYNFSSQS 240 ISQSVSSSSM EVGVVPDHNA MADVSNNFSR SDAVPNPVSG VDREARVLRY REKRKNRKFE 300 KTIRYASRKA YAETRPRIKG RFAKRAEVEI ESLIVADASY GVVPTY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24930.1 | 6e-98 | CO-like family protein |