PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027182936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YA | ||||||||
Protein Properties | Length: 253aa MW: 27771.5 Da PI: 9.788 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 90 | 3.3e-28 | 96 | 150 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+ VNaKQy++Il+RR Rak e+++k+ k rkpylheSRhkhA+rRpRgsgGrF XP_027182936.1 96 PVLVNAKQYRAILRRRRIRAKHEAQNKM-LKFRKPYLHESRHKHAVRRPRGSGGRF 150 99**************************.9*************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence |
MADAARNSTS GDETHGRRAE QYQRSPLLCV SADFTVSQVQ LDYNKSLACI PFPSSESYFG 60 GLVAAYGPNA LVCPPMVGML HARVPLPPLQ CAEGMPVLVN AKQYRAILRR RRIRAKHEAQ 120 NKMLKFRKPY LHESRHKHAV RRPRGSGGRF LNTKDIKPSN LSSPSYTEDA PLKMLAGDIS 180 GSEARLSESC SWAASTPSGS DVTSIFNGDD IFQHPENQVS ASSFHMGMRV GKDSTHLEAG 240 NLLFLSIDGR ARN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 144 | RHKHAVRRPR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 4e-39 | NF-YA family protein |