PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182774.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 491aa MW: 54065.6 Da PI: 6.7379

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.5e-17	167	216	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_027182774.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence
MLDLNLSVVN DEEAGIFEEG MGEYESAEET SDSSVVNAEA AEASSNATTV DDDTCSARAG 60 ANSSSDLLTF NFDILKVNGA NRGEEVEGED ENQVVFGGRM TAAHQPDFVT KNLFPVAELG 120 PGRAPDRARS NAGNWADLSF SHQQKQPPQQ QQQQVKKSRR GPRSRSSQYR GVTFYRRTGR 180 WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFTICDYEE DMKQMKNLTK 240 EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKAYDKAAI KCNGREAVTN 300 FEPSTYEPEM PSNMVQPHSQ NEGSHHDLDL NLGISTSSGK ENGSSRDVHY HPYDVQKARI 360 SKIDISSTTV NSPPLKGLPL TPERPQLWTG VYSNSMPNYK ERVIENRFEV GSSQGPQKWA 420 WQMQSQLSAT PVTVFSTAAS SGFSSSASNA SSPSSKAPNS SAVGLCFASY PVSSANNSQC 480 RFQLGPQWPP T

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence

MLDLNLSVVN DEEAGIFEEG MGEYESAEET SDSSVVNAEA AEASSNATTV DDDTCSARAG  60
ANSSSDLLTF NFDILKVNGA NRGEEVEGED ENQVVFGGRM TAAHQPDFVT KNLFPVAELG  120
PGRAPDRARS NAGNWADLSF SHQQKQPPQQ QQQQVKKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGIDAD INFTICDYEE DMKQMKNLTK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKAYDKAAI KCNGREAVTN  300
FEPSTYEPEM PSNMVQPHSQ NEGSHHDLDL NLGISTSSGK ENGSSRDVHY HPYDVQKARI  360
SKIDISSTTV NSPPLKGLPL TPERPQLWTG VYSNSMPNYK ERVIENRFEV GSSQGPQKWA  420
WQMQSQLSAT PVTVFSTAAS SGFSSSASNA SSPSSKAPNS SAVGLCFASY PVSSANNSQC  480
RFQLGPQWPP T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	1e-95	AP2 family protein