PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182737.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SRS

Protein Properties

Length: 379aa MW: 41975.7 Da PI: 7.5965

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182737.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	24.7	6.5e-08	46	82	5	41
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvks 41 + +C CGn a+ C ++ C+ CC C+ hv XP_027182737.1 46 KPKCIKCGNVARSRCPYQSCKSCCAKAQNPCHIHVLK 82 568*******************************954 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MAASSPALSN NSNDTPSSSG AGAATFNVNT PPSAAATSKN LRGLNKPKCI KCGNVARSRC 60 PYQSCKSCCA KAQNPCHIHV LKGGSNIPDK INSSSSPATD PQSADVSHSG NSHRVASLRQ 120 LSNTFAQFNN LQTPVRSRKP LTRKDAQVIN EWRFLKLKEF RDRNIEAENE AFDRYMRNVS 180 LLEEVFCVNS ALDGQFEEGS SAANTDRSVD DCNEIMVPGL KLKLRSNPVR IENFRKRVQY 240 IVDQGLRELN KLESNDGNGE LGDPDEMGNR PKKMKSSWRA ERASALSDLI DKLNKARNEE 300 DLKACFDMYS HISKRASKTS QADSDLAEAS DEQNPVDNLL HKERASYAPS KWFSSTPIDQ 360 ESLCRIDSYF CSLEDVEDL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MAASSPALSN NSNDTPSSSG AGAATFNVNT PPSAAATSKN LRGLNKPKCI KCGNVARSRC  60
PYQSCKSCCA KAQNPCHIHV LKGGSNIPDK INSSSSPATD PQSADVSHSG NSHRVASLRQ  120
LSNTFAQFNN LQTPVRSRKP LTRKDAQVIN EWRFLKLKEF RDRNIEAENE AFDRYMRNVS  180
LLEEVFCVNS ALDGQFEEGS SAANTDRSVD DCNEIMVPGL KLKLRSNPVR IENFRKRVQY  240
IVDQGLRELN KLESNDGNGE LGDPDEMGNR PKKMKSSWRA ERASALSDLI DKLNKARNEE  300
DLKACFDMYS HISKRASKTS QADSDLAEAS DEQNPVDNLL HKERASYAPS KWFSSTPIDQ  360
ESLCRIDSYF CSLEDVEDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-95	SRS family protein