PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182635.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 443aa MW: 49280.4 Da PI: 9.7921

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182635.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.3	4.9e-19	27	118	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLi+a+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ + + + s++ +f++++a XP_027182635.1 27 CWTQEETLALIDAYRERWYALRRGYLRTADWDAVAAAVtnrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLSYpSGRFFSSWFFFENMDA 118 8**********************************987776677788999***************999867788899***9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MSVTTTTVAP AAADAAGRPA RKFPPPCWTQ EETLALIDAY RERWYALRRG YLRTADWDAV 60 AAAVTNRCPD ASPAKTSAQC RHKMEKLRQR YRAEKQRSLS YPSGRFFSSW FFFENMDAME 120 NGTSVSVAGS NREPENRENS ASGFPLKTFL DQNILKLKLS TKNRSTKVDG NSTPNFGFSQ 180 GVRAKNSSKN ADKKVGSDFS SKVFNGGYSS YMDIGSDKDE EEMDFHGGFG AKNVDDGMPG 240 LTGFKGKNFG KILGNSRSGF EFESLGGKGF EASDGFHMQT LGDESMVPPR LRLKRIGKVN 300 RSFDADQAKD GSWVSLGTRR KYAENLDSDL DSSGGLNGFY DQSRLGFEKR GFGCDSGGRG 360 EAKRGRSSID EMVSSIKMLG EGFMKMENMK MDMAREMEKN RMEMEMKRNE LILESQRQIV 420 DALAQSLMEI KRKKVKITAA PET

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MSVTTTTVAP AAADAAGRPA RKFPPPCWTQ EETLALIDAY RERWYALRRG YLRTADWDAV  60
AAAVTNRCPD ASPAKTSAQC RHKMEKLRQR YRAEKQRSLS YPSGRFFSSW FFFENMDAME  120
NGTSVSVAGS NREPENRENS ASGFPLKTFL DQNILKLKLS TKNRSTKVDG NSTPNFGFSQ  180
GVRAKNSSKN ADKKVGSDFS SKVFNGGYSS YMDIGSDKDE EEMDFHGGFG AKNVDDGMPG  240
LTGFKGKNFG KILGNSRSGF EFESLGGKGF EASDGFHMQT LGDESMVPPR LRLKRIGKVN  300
RSFDADQAKD GSWVSLGTRR KYAENLDSDL DSSGGLNGFY DQSRLGFEKR GFGCDSGGRG  360
EAKRGRSSID EMVSSIKMLG EGFMKMENMK MDMAREMEKN RMEMEMKRNE LILESQRQIV  420
DALAQSLMEI KRKKVKITAA PET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	290	299	RLRLKRIGKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	2e-35	Trihelix family protein