PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027182616.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92822.3 Da    PI: 6.4194
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027182616.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-182179357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_027182616.1 21 KYVRYTPEQVEALERLYHDCPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 79
                    5679*****************************************************97 PP
2START183.71e-571653732205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l++ s+g  g+++l 
  XP_027182616.1 165 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGIASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDILNAMSTGngGTIELL 258
                     789*******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l+
  XP_027182616.1 259 YMQLYAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLEPWSVPEVIRPLY 353
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++  ++kt++a+l+++++
  XP_027182616.1 354 ESSTLLAQKTTMAALRQLRQ 373
                     ****************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    
MMAVTSACKD GGTKVQLDNG KYVRYTPEQV EALERLYHDC PKPSSLRRQQ LIRECPILSN  60
IEPKQIKVWF QNRRCREKQR KEASRLQGVN RKLTAMNKLL MEENDRLQKQ VSQLVYENSF  120
FRQQSQNATL ATTDNSCESV VTSGQPHLTP QRPPRDASPA GLLSIAEETL TEFLSKATGT  180
AVEWVQMPGM KPGPDSIGII AISHGCTGIA SRACGLVGLE PTRVAEILKD RPSWFRDCRA  240
VDILNAMSTG NGGTIELLYM QLYAPTTLAP ARDFWLLRYT SVMEDGSLVV CERSLNNTQN  300
GPSMPPVQHF VRAEMLPSGY LIRPCEGGGS IIHIVDHIDL EPWSVPEVIR PLYESSTLLA  360
QKTTMAALRQ LRQISLEVSQ PTVTGWGRRP AALRALSQRL SKGFNEAVNG FTDEGWSMLD  420
SDGIDDVTVL VNSSPSKLTG VNFHYTNGFS SVSNAVLCAK ASMLLQNVPP AILLRFLREH  480
RSEWADSGID AYSAAAIKAS PCSVPVSRAG NFGGQVILPL AHTIEHEEFM EVIRLENIGH  540
YREDMIMPAD IFLLQLCSGV DENAIGTCAE LIFAPIDASF SDDAPLLPSG FRIIPLDSKV  600
DSSSPNRTLD LASTLEVGPS GNRISGECSR HSGSAKSVMT IAFQFAFEMH LQENVAAMAR  660
QYVRSIISSV QRVALALSPS HLGSHPGLRP PPGTPEAQTL ARWICQSYRF FLGVELLKPV  720
SEGSESILKT LWHHSDALMC CSLKPLPVFT FANQAGLDML ETTLVALQDI TLEKIFDDNG  780
RKTLFSELPQ IMQQGFACLQ GGICLSSMGR PVSYERAVAW KVLNEEENAH CICFMFVNWS  840
FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein