PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182333.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 348aa MW: 37793.6 Da PI: 6.5481

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182333.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00082	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H XP_027182333.1 147 YECKTCNRTFPSFQALGGHRASH 169 99**********99999998887 PP
2	zf-C2H2	11.7	0.00081	243	265	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H XP_027182333.1 243 HECSICGAEFASGQALGGHMRRH 265 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MEFMDALEEF SGSNDHSIVI KGKRTKRRQR PLSPVGRAAV VTSSSSSGGG GGGGDDQGGG 60 KDGEVLGYIY SLIPSCNTST SDISISATST GQEDEDMANC LILLAQGESC RKQVDQDRES 120 KMEKFTSRRF NEMDTTTTGG KVGFFVYECK TCNRTFPSFQ ALGGHRASHK KPKINIEDNK 180 ATIVTPSNDH HHHHQEEEEE EKESAGEEQA AGQLIGRQSP PLSIQSTNKP CSTAASNKAS 240 KSHECSICGA EFASGQALGG HMRRHRNSMT ASTSKVATIL ETSPSIDHHT DSSSHDHHVQ 300 KPRNIFPLDL NLPAPSEDDV HRDLKFQFSA NQQPHLVFSA PALVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MEFMDALEEF SGSNDHSIVI KGKRTKRRQR PLSPVGRAAV VTSSSSSGGG GGGGDDQGGG  60
KDGEVLGYIY SLIPSCNTST SDISISATST GQEDEDMANC LILLAQGESC RKQVDQDRES  120
KMEKFTSRRF NEMDTTTTGG KVGFFVYECK TCNRTFPSFQ ALGGHRASHK KPKINIEDNK  180
ATIVTPSNDH HHHHQEEEEE EKESAGEEQA AGQLIGRQSP PLSIQSTNKP CSTAASNKAS  240
KSHECSICGA EFASGQALGG HMRRHRNSMT ASTSKVATIL ETSPSIDHHT DSSSHDHHVQ  300
KPRNIFPLDL NLPAPSEDDV HRDLKFQFSA NQQPHLVFSA PALVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	9e-51	C2H2 family protein