PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027181654.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 422aa MW: 47610.7 Da PI: 9.3995

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027181654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.4	9.9e-15	78	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_027181654.1 78 SRFRGVSRHRWTGRFEAHLWDkASWNAtqkKKgKQVYLGAYDEEEAAARAYDLAAIKYWG 137 789****************888888876447***********************98 PP
2	AP2	56.3	8.2e-18	180	231	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g XP_027181654.1 180 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYRG 231 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MELSIVKSEA SARSRSYCLV ESDVPETKCV RRRRRSPSAM TVLTGEASPG GRDQQQPQIQ 60 QVDQNNGANA TTTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNATQKKKG KQVYLGAYDE 120 EEAAARAYDL AAIKYWGTST FTNFPTSDYA NEIEIMQNLT KEEYLASLRR RSSGFARGVS 180 KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYGTQEEAAR AYDIAAIEYR GINAVTNFDL 240 STYIKWLKPG SSSTASHDLL TSQPVETASI HNFNLTDHQE PHRHEFSFNP NSFKSGPLSV 300 PQKQEVIERK MPLSPCSMSS SPTALSLLLR SSMFREMVEK TSNADNDDQN DGNDLKNQPV 360 QGGGHQQDDF SFFPGSSLSF PYFYPFNSGH KLPELASEEK RVSPFSASRW NDAFNTSPFF 420 NS

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MELSIVKSEA SARSRSYCLV ESDVPETKCV RRRRRSPSAM TVLTGEASPG GRDQQQPQIQ  60
QVDQNNGANA TTTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNATQKKKG KQVYLGAYDE  120
EEAAARAYDL AAIKYWGTST FTNFPTSDYA NEIEIMQNLT KEEYLASLRR RSSGFARGVS  180
KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYGTQEEAAR AYDIAAIEYR GINAVTNFDL  240
STYIKWLKPG SSSTASHDLL TSQPVETASI HNFNLTDHQE PHRHEFSFNP NSFKSGPLSV  300
PQKQEVIERK MPLSPCSMSS SPTALSLLLR SSMFREMVEK TSNADNDDQN DGNDLKNQPV  360
QGGGHQQDDF SFFPGSSLSF PYFYPFNSGH KLPELASEEK RVSPFSASRW NDAFNTSPFF  420
NS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-81	AP2 family protein