PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027181625.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 351aa MW: 39658.6 Da PI: 7.6189

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027181625.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.8	9.4e-06	189	208	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ XP_027181625.1 189 FACNICNKTFNRYNNMQMHM 208 78*****************9 PP
2	zf-C2H2	16	3.3e-05	273	295	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +CgksF k + ++H +++ XP_027181625.1 273 FNCRKCGKSFAVKGDWRTHEKNC 295 78*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MGIRTTNCHV QDMNMCFQAA PTFIEWLKPT HESSSSSSSS SSTISSTQQE FLDQFTNPMS 60 FLKLPLFYQQ QEEELAVHES IQCLPLLSQF TDTKKPLKEE LDEDGIGQEE SIFGIKGSDK 120 VEKVTVALHI GLPDSGSASS DSETKPYNLK EKPVDNYQKS PSTDGCTFNN ESRFWIPTPA 180 QILVGPMQFA CNICNKTFNR YNNMQMHMWG HGSEFRKGPE SLRGAQPAAM LRLPCYCCAQ 240 GCKNNINHPR AKPLKDFRTL QTHYKRKHGA KPFNCRKCGK SFAVKGDWRT HEKNCGKLWY 300 CTCGSDFKHK RSLKDHIRSF GNGHSPHPSL EGFEDEKECI TGGSEDENAQ Y

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MGIRTTNCHV QDMNMCFQAA PTFIEWLKPT HESSSSSSSS SSTISSTQQE FLDQFTNPMS  60
FLKLPLFYQQ QEEELAVHES IQCLPLLSQF TDTKKPLKEE LDEDGIGQEE SIFGIKGSDK  120
VEKVTVALHI GLPDSGSASS DSETKPYNLK EKPVDNYQKS PSTDGCTFNN ESRFWIPTPA  180
QILVGPMQFA CNICNKTFNR YNNMQMHMWG HGSEFRKGPE SLRGAQPAAM LRLPCYCCAQ  240
GCKNNINHPR AKPLKDFRTL QTHYKRKHGA KPFNCRKCGK SFAVKGDWRT HEKNCGKLWY  300
CTCGSDFKHK RSLKDHIRSF GNGHSPHPSL EGFEDEKECI TGGSEDENAQ Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-123	C2H2 family protein