PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027181196.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 580aa    MW: 62283.8 Da    PI: 8.6917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027181196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0589111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_027181196.1  89 FICEICNKGFQRDQNLQLHRRGH 111
                     89*******************88 PP

2zf-C2H212.30.00053166188123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k++  +s+ k H + +
  XP_027181196.1 166 WKCEKCSKRYAVQSDWKAHSKIC 188
                     58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    
MMKAAGMVVE DSMSNLTSGS NDASISSGNR LEIGAVYPQQ QQQPPLASSP TNQSAQPASK  60
KKRNLPGNPD PEAEVIALSP RTLLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
SNKEVIRKKV YICPETTCVH HDPSRALGDL TGVKKHFSRK HGEKKWKCEK CSKRYAVQSD  180
WKAHSKICGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARAITTNNH PLGLLGGGGN  240
STTSSVQLHL QNHPLHGGGL PVFPLKREQD QLQLQLQRQQ SFNSNLRPPE LPPWLCDPGG  300
GPPTSHDLFS SPRLDQTMIH HHENVNNPNP NPTLSSSFQA AAASASPHMS ATALLQKAAQ  360
MGVTISKPAS SQSAAGADEV AAAALATTTM LRPHQAAHVS TGLMGSTSII LATSTAGSSL  420
GLASREDQMG IGSSSGSGLM HHHGLMASFG NKTSAITSAG CMEHPHQEQI GVGPLTTHDH  480
LGGGALMGMV NSHHHDGFGE NFQEVLLTSR RENNGSSSGK EGGVFGGRGN NINDGLTRDF  540
LGLKAFPTAR ETFLSLEDLH ELGGSSFNGQ HGHHNPAAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116129KLKQRSNKEVIRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-116C2H2 family protein