PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027180401.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 387aa    MW: 44430.9 Da    PI: 9.4521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027180401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014140163123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     y C  Cg+ F +++ L +H r  H
  XP_027180401.1 140 YLCRVCGRKFYTNEKLINHFRQiH 163
                     56*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    
MFSLKLIEVR NLYTAIESSR GLKNLSPCLV LYRNCHFYAN SSAGSDFSGE SFGLVKRVAQ  60
KNVGIFWDLD NKPPKSCPPY DAAIRLRKAM LEFGFVRYLI AYANRHAFSY VPPEVLAQRK  120
ERKALNQLER KGVAKPNVPY LCRVCGRKFY TNEKLINHFR QIHESEQRKR LNQIESARGK  180
RRVNLVAKYS MKMDKYRNAA REILTPKVGY GLADELKRAG FWVRAVLDKP QAADVALRNH  240
IVDMMDKRLI DCVVLVSDDS DFVRVLKEAR ERCLRTVVVG DVNDGALKRT ADASFSWQEI  300
LMGKAKKEAV SVVERWKDRD VLKGLEWTYD PETERELCYS DVLSEGSDVE DVFSGNEDGN  360
VQQEDAAPWW KLEPDTVTMN SFSHSRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-147C2H2 family protein