PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027180382.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 562aa MW: 59821.9 Da PI: 7.5527

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027180382.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.9	3.7e-38	98	259	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssase 72 g+kdrhsk+ T +g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a +i el++ +++sa e XP_027180382.1 98 SGGKDRHSKVWTTKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSIAELPSIntafpdtpqqlsdekrssagthehGFDSA-E 191 689*********************************************************9988998888888877776665555544444.2 PP TCP 73 c...eaesssssasnsssg..kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136 + + + +++++++ + a +++a+s+ s++s+ s l+l++ esr kar+rarer +ek + k+k+ XP_027180382.1 192 VdmeGELNYQQQQQQQ--QqlGAFSKSACSSTSETSKGSGLSLSRsESRIKARERARERAAEKEKEKEKE 259 2333222222222222..2446777777999999999999*********************9999776 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MEMEEMQTPG CKFPRIRSRS GRINDDAAKI GHKGDDQCKP EEDEADGEEE VKRANVNGSA 60 RGGGGAVGVG GLDITASSGL GRLCGWPSSR IVRVSRASGG KDRHSKVWTT KGLRDRRVRL 120 SVTTAIQFYD LQDRLGYDQP SKAVEWLLKA AASSIAELPS INTAFPDTPQ QLSDEKRSSA 180 GTHEHGFDSA EVDMEGELNY QQQQQQQQQL GAFSKSACSS TSETSKGSGL SLSRSESRIK 240 ARERARERAA EKEKEKEKEE SSRVAHQPHL NVNPISENSS FTQLLTAGMS NSANVSNTSS 300 NNNTTGSPTG GSIHQNPGSG GGSGSGSGGS NAGGNGNNGT ANESNFFHKS SSRHWSSSTP 360 MDYFATGLLG LSSSSRAIHQ PSASFLGQIQ LGNPLHQSLT SVSSPLFTIT ADHHHHHSHH 420 TDLPHFSFVP DHLVPVVTAA GGNGNSHSNH TGNGNGSNSD YNLNFTISSP SSSGLAFNRG 480 TLQSNSSSPP SLLPHVQRFS PIDGPSSAFF SSTTASPPNA AVAPVENHHH HHHHFLPGFD 540 ARLQFCYGDG TRHSDHKSKG KN

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MEMEEMQTPG CKFPRIRSRS GRINDDAAKI GHKGDDQCKP EEDEADGEEE VKRANVNGSA  60
RGGGGAVGVG GLDITASSGL GRLCGWPSSR IVRVSRASGG KDRHSKVWTT KGLRDRRVRL  120
SVTTAIQFYD LQDRLGYDQP SKAVEWLLKA AASSIAELPS INTAFPDTPQ QLSDEKRSSA  180
GTHEHGFDSA EVDMEGELNY QQQQQQQQQL GAFSKSACSS TSETSKGSGL SLSRSESRIK  240
ARERARERAA EKEKEKEKEE SSRVAHQPHL NVNPISENSS FTQLLTAGMS NSANVSNTSS  300
NNNTTGSPTG GSIHQNPGSG GGSGSGSGGS NAGGNGNNGT ANESNFFHKS SSRHWSSSTP  360
MDYFATGLLG LSSSSRAIHQ PSASFLGQIQ LGNPLHQSLT SVSSPLFTIT ADHHHHHSHH  420
TDLPHFSFVP DHLVPVVTAA GGNGNSHSNH TGNGNGSNSD YNLNFTISSP SSSGLAFNRG  480
TLQSNSSSPP SLLPHVQRFS PIDGPSSAFF SSTTASPPNA AVAPVENHHH HHHHFLPGFD  540
ARLQFCYGDG TRHSDHKSKG KN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-38	TCP family protein