PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027180072.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 422aa MW: 48397.6 Da PI: 7.8451 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.6 | 2.5e-06 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F r nL+ H r+H XP_027180072.1 54 YVCEICNQCFQREQNLQMHRRRH 76 9*********************9 PP | |||||||
2 | zf-C2H2 | 14 | 0.00015 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H + + XP_027180072.1 131 WVCEKCSKGYAVQSDYKAHVKIC 153 58*****************9987 PP | |||||||
3 | zf-C2H2 | 10.8 | 0.0016 | 161 | 179 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr + + H+ t+ XP_027180072.1 161 DCGRVFSRVEAFIEHQDTC 179 9***************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence |
MLACQSFSLP SSEIFACPND GLLTKKKRRP AGTPDPDAEV VYLSPEMLME SDRYVCEICN 60 QCFQREQNLQ MHRRRHKVPW KLLKKDKQEV KKRVYVCPEP TCLHHDPCHA LGDLVGIKKH 120 FRRKHSNNKQ WVCEKCSKGY AVQSDYKAHV KICGTRGHSC DCGRVFSRVE AFIEHQDTCK 180 ARMTDYMCQG IPAADPFHHS TLSPDFLGDR SFHNNLSEMP RQKVLDSAFD GQNNNGTVTG 240 FCHNLELELF SSSNSSLSGV NFSNTGSVAS EQNHHTSQSN IGSFIPEPET EGDYSNSVWY 300 NYDAWNHSYY RESMDAKVMP PEAVRLRDEA RELSRVAKEE KALAEEKRHQ AKCLIEMAKQ 360 EMTRARTIRE QAFYEFNAAE LMKDCATRHI SSNFVQITCN ACRRDFIQEK PSQLRVPSHL 420 PF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 25 | 29 | KKKRR |
2 | 25 | 30 | KKKRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-95 | C2H2 family protein |