PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027180072.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 422aa    MW: 48397.6 Da    PI: 7.8451
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027180072.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-065476123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C+++F r  nL+ H r+H
  XP_027180072.1 54 YVCEICNQCFQREQNLQMHRRRH 76
                    9*********************9 PP

2zf-C2H2140.00015131153123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k +  +s++k H + +
  XP_027180072.1 131 WVCEKCSKGYAVQSDYKAHVKIC 153
                     58*****************9987 PP

3zf-C2H210.80.0016161179523
                     TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                     dCg++Fsr + +  H+ t+
  XP_027180072.1 161 DCGRVFSRVEAFIEHQDTC 179
                     9***************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    
MLACQSFSLP SSEIFACPND GLLTKKKRRP AGTPDPDAEV VYLSPEMLME SDRYVCEICN  60
QCFQREQNLQ MHRRRHKVPW KLLKKDKQEV KKRVYVCPEP TCLHHDPCHA LGDLVGIKKH  120
FRRKHSNNKQ WVCEKCSKGY AVQSDYKAHV KICGTRGHSC DCGRVFSRVE AFIEHQDTCK  180
ARMTDYMCQG IPAADPFHHS TLSPDFLGDR SFHNNLSEMP RQKVLDSAFD GQNNNGTVTG  240
FCHNLELELF SSSNSSLSGV NFSNTGSVAS EQNHHTSQSN IGSFIPEPET EGDYSNSVWY  300
NYDAWNHSYY RESMDAKVMP PEAVRLRDEA RELSRVAKEE KALAEEKRHQ AKCLIEMAKQ  360
EMTRARTIRE QAFYEFNAAE LMKDCATRHI SSNFVQITCN ACRRDFIQEK PSQLRVPSHL  420
PF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12529KKKRR
22530KKKRRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-95C2H2 family protein