PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027179992.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 543aa MW: 60730.4 Da PI: 5.2422

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027179992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.7	1.2e-26	57	140	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r +m+ ++r++ k+plW+evs+k+ e g++rs+ +Ckek+en+ k++k++ke +++r ++ +++++f+qle XP_027179992.1 57 RWPREETLALLKIRADMDLAFRDSTVKAPLWDEVSRKLGELGYHRSARKCKEKFENIFKYHKRTKECRSGR--QNGKNYRFFEQLE 140 8******************************************************************98..45567*****8 PP
2	trihelix	99.1	3.8e-31	371	455	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aL+++r++++ +++++ lk+plWee+s++m++ g+ rs+k+Ckekwen+nk+yk+++e+ k+r +ess+tcpyf+ le XP_027179992.1 371 RWPKAEVEALVRLRTNLGMQFQDNGLKGPLWEEISSAMKKLGYDRSAKRCKEKWENINKYYKRVRESHKRR-PESSKTCPYFHLLE 455 8******************************************************************97.9********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MLDNSGGAGG GGGGSGAALL EAAAEVMVGA ENGGGGGGGG GGGEEEEERG KGEGGNRWPR 60 EETLALLKIR ADMDLAFRDS TVKAPLWDEV SRKLGELGYH RSARKCKEKF ENIFKYHKRT 120 KECRSGRQNG KNYRFFEQLE RFDNQPSLPS PPLSQIQTHV AETTKTTTIA APTIIKVTSG 180 SLDSMVPHPS ENPNMEFVTP STSTTSSSGR ESEGSVKKKR KLSDYFEKLM KEILEKQENL 240 QNQLLAALEK CERDRIAREE AWRLQQMDRI RKEQEYLANE RAISAARDAT VMAFLQKISE 300 QAIPGQFAEA ATPISEKHPD KQQVQTPGPF TPGTIENQEL GTSIGRQEDM FDVDKRGNGF 360 GESSIQATTS RWPKAEVEAL VRLRTNLGMQ FQDNGLKGPL WEEISSAMKK LGYDRSAKRC 420 KEKWENINKY YKRVRESHKR RPESSKTCPY FHLLESIYEK KSKGVEQNSE WSGNNLEPEH 480 ILMQMMGQQE QQPQQHQQLT EDGGSENADE NREDDAMEEE EENDNGDGYE LVANHPSSVA 540 SME

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MLDNSGGAGG GGGGSGAALL EAAAEVMVGA ENGGGGGGGG GGGEEEEERG KGEGGNRWPR  60
EETLALLKIR ADMDLAFRDS TVKAPLWDEV SRKLGELGYH RSARKCKEKF ENIFKYHKRT  120
KECRSGRQNG KNYRFFEQLE RFDNQPSLPS PPLSQIQTHV AETTKTTTIA APTIIKVTSG  180
SLDSMVPHPS ENPNMEFVTP STSTTSSSGR ESEGSVKKKR KLSDYFEKLM KEILEKQENL  240
QNQLLAALEK CERDRIAREE AWRLQQMDRI RKEQEYLANE RAISAARDAT VMAFLQKISE  300
QAIPGQFAEA ATPISEKHPD KQQVQTPGPF TPGTIENQEL GTSIGRQEDM FDVDKRGNGF  360
GESSIQATTS RWPKAEVEAL VRLRTNLGMQ FQDNGLKGPL WEEISSAMKK LGYDRSAKRC  420
KEKWENINKY YKRVRESHKR RPESSKTCPY FHLLESIYEK KSKGVEQNSE WSGNNLEPEH  480
ILMQMMGQQE QQPQQHQQLT EDGGSENADE NREDDAMEEE EENDNGDGYE LVANHPSSVA  540
SME

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	7e-60	Trihelix family protein