PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027179750.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SRS

Protein Properties

Length: 377aa MW: 40630.1 Da PI: 7.6633

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027179750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.9	2.2e-67	132	296	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...............aeaaskrkrelkskk 82 g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++++ ++ +++kr++++++ XP_027179750.1 132 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQQLASLQQQEQTQEnqnqqqqqlqlhhghSHRGENSKRQKENRA 226 5789**************************************************998877766567777777777765333334444445677 PP DUF702 83 qsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +s+l +t+l+s++s +e+ ++P+evs++avfrcvrvss+d++e+++aYqtav+igGhvfkGiLydqGle+ XP_027179750.1 227 SSSLVCTRLPSNSS--GFEVGHFPAEVSTSAVFRCVRVSSIDENEDQYAYQTAVNIGGHVFKGILYDQGLES 296 78888888888764..589999*********************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MAGFFSLGGG GSSRGGSSSN QESSSHNNTT TNNQQHQPTE INPENWFLYK SDEYKGFEIW 60 HPQPQHQYHQ PHNQPEHHHF RHHNPSLQDF YPSAGGGLDF GPSSSHRGGG GGLNISSDEP 120 SRSAFVMMRS SGGGISCQDC GNQAKKDCAH MRCRTCCKSR GFQCSTHVKS TWVPAAKRRE 180 RQQQLASLQQ QEQTQENQNQ QQQQLQLHHG HSHRGENSKR QKENRASSSL VCTRLPSNSS 240 GFEVGHFPAE VSTSAVFRCV RVSSIDENED QYAYQTAVNI GGHVFKGILY DQGLESQYMT 300 TESSSGGGSG STTGVQQLNL ITGTAATATS TGTTTVSGGG GGGGGAAAGS PFLDPSMYPA 360 PLNSYMAGTQ FFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MAGFFSLGGG GSSRGGSSSN QESSSHNNTT TNNQQHQPTE INPENWFLYK SDEYKGFEIW  60
HPQPQHQYHQ PHNQPEHHHF RHHNPSLQDF YPSAGGGLDF GPSSSHRGGG GGLNISSDEP  120
SRSAFVMMRS SGGGISCQDC GNQAKKDCAH MRCRTCCKSR GFQCSTHVKS TWVPAAKRRE  180
RQQQLASLQQ QEQTQENQNQ QQQQLQLHHG HSHRGENSKR QKENRASSSL VCTRLPSNSS  240
GFEVGHFPAE VSTSAVFRCV RVSSIDENED QYAYQTAVNI GGHVFKGILY DQGLESQYMT  300
TESSSGGGSG STTGVQQLNL ITGTAATATS TGTTTVSGGG GGGGGAAAGS PFLDPSMYPA  360
PLNSYMAGTQ FFPPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-70	SRS family protein