PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027179316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 28804.1 Da PI: 6.0336 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H XP_027179316.1 108 FPCNFCQRKFYSSQALGGHQNAH 130 89*****************9988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MEHLKFDLEK EASYENSSDI SSQVASNISV KEHFMDPRKS ILSESSQLTD VTTQLSSEYL 60 LLDLSLNFKS STNELACQES KGFSVSSTSE SSNEPANQTK VAATPRVFPC NFCQRKFYSS 120 QALGGHQNAH KRERTLAKRA MRMGIFSDRY ASLASLPLHG SSFRSLGIKA HSSVHHGFAI 180 AGAGRLPDFG TSARFEQPYM AQPIYMEDDP ELLWPGSFRQ VADPGNSPQS FIVTGSSGLD 240 FAELNPPLEE DHFAPDLTLR L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 7e-44 | C2H2 family protein |