PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027179015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 512aa    MW: 52893.2 Da    PI: 7.9566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027179015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056789123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_027179015.1 67 FVCEICNKGFQRDQNLQLHRRGH 89
                    89*******************88 PP

2zf-C2H211.20.0012143165123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k +  +s+ k H + +
  XP_027179015.1 143 WKCDKCSKKYAVQSDWKAHSKIC 165
                     58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    
MPADMDNSSV MNDSTASGDA SASSSGNQAA APPTSSAKKK RNLPGMPDPD AEVIALSPKT  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KEVKKRVYVC PELTCVHHDP  120
SRALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKICGTREY KCDCGTLFSR  180
RDSFITHRAF CDALAEESAK AQTVEALPAP TADDEEPKLQ TLASSSPPPS VAAQPPPPAA  240
LASSALPVQN PEGPENPKQS PAPPQILEET SVVTSLTGSC GSSSSSSSHG STSSSVFASL  300
FASSTTSGSM QSQTPEFTDL FRAVARPENA SEVVASSSTE PISLCLATSH GSSIFGTAGQ  360
ERRQYAPAPQ PAMSATALLQ KAAQIGAAAT NASLLRGFGI VSSASASSGQ QEWSGRGIES  420
DSASLAAGLG LGLPCDGGSS LKELMLGTPS VFGPKHTTLD LLGLGMAAGG GPSGGFSALM  480
TSIGGGLDVA AAAAASFGGS GEYSGKDMGR GS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-106C2H2 family protein