PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027179014.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 522aa MW: 56985.5 Da PI: 5.8672

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027179014.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.7e-18	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_027179014.1 39 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	52.3	1.3e-16	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ XP_027179014.1 92 KGAFTPEEERRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MSMTSESEDR MVPKGAIGSP SVEETSGGGN FGVNGPLKKG PWTSAEDAIL VEYVTKHGEG 60 NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM GNKWARMAAE 120 LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DICLQALSES KQSENLSSFS SVETQHPDLL 180 PINSFEIPAV EFKNLELNHQ LYPSPLLDVP GRGLLDIPAS SLLAQGLHSS YGGKILLSAV 240 HPTKRLRQSE SLFPGLATSF TGAFTNCSKY HNDGSAQNLQ SFGITSAYDQ NLTSDNQSTS 300 CVLPGSHALL NGNPSSSEPS WAMKLELPSL QTQIGSWGSP SSPLPSLESV DTLIQSPPTE 360 HTQSGSLSPR NSGLLDAVLY ESQSLKNFKS SSCQHMSSVS MAQGEVMDNS LQDLHEAEWE 420 AYGDPISPRG HSAASVLSEY TPISRSSMDE LQSLENTPGG KVKQEAEEMV PTQFCGNDDA 480 FNSNNMIFSR PDFLLASNCF GPKGEYGKEQ LHAERCSWGT SW

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MSMTSESEDR MVPKGAIGSP SVEETSGGGN FGVNGPLKKG PWTSAEDAIL VEYVTKHGEG  60
NWNAVQKHSG LARCGKSCRL RWANHLRPDL KKGAFTPEEE RRIIELHAKM GNKWARMAAE  120
LPGRTDNEIK NYWNTRIKRR QRAGLPIYPP DICLQALSES KQSENLSSFS SVETQHPDLL  180
PINSFEIPAV EFKNLELNHQ LYPSPLLDVP GRGLLDIPAS SLLAQGLHSS YGGKILLSAV  240
HPTKRLRQSE SLFPGLATSF TGAFTNCSKY HNDGSAQNLQ SFGITSAYDQ NLTSDNQSTS  300
CVLPGSHALL NGNPSSSEPS WAMKLELPSL QTQIGSWGSP SSPLPSLESV DTLIQSPPTE  360
HTQSGSLSPR NSGLLDAVLY ESQSLKNFKS SSCQHMSSVS MAQGEVMDNS LQDLHEAEWE  420
AYGDPISPRG HSAASVLSEY TPISRSSMDE LQSLENTPGG KVKQEAEEMV PTQFCGNDDA  480
FNSNNMIFSR PDFLLASNCF GPKGEYGKEQ LHAERCSWGT SW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	3e-87	MYB family protein