PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027178723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 398aa MW: 43755.7 Da PI: 6.1003 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.7 | 2.6e-07 | 157 | 178 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_027178723.1 157 FCEICGKGFKRDANLRMHMRAH 178 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.0008 | 280 | 296 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ XP_027178723.1 280 SCGTSFSRKDKLFGHMA 296 5**************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence |
MSFLGNLPSS AKPPGGAAPY PGGADPSVAL LNLSTVQARM DNLQKFLSDS VNSKTLIGQD 60 HMDMVSTEIT SAIRQIIVNG AALLACTQST QATSLPQASD VEEKKVEKKM RFDTAKDTVL 120 GNQLVDPKIE VAEDEESDDY EILELDAVEL LAEHIHFCEI CGKGFKRDAN LRMHMRAHGN 180 QFKTVEALAK PARCGESGGG AEKDMIRKTR FSCPYVGCNR NKQHKKFRPL KSAICVKNHF 240 KRSHCPKMYS CNRCNKKSFS VVADLKSHLK HCGETKWKCS CGTSFSRKDK LFGHMALFEG 300 HMPAVVEEEE AVDKGKRVVV MVEDEEEEES SPGTKEMKMG MDIEMDMDGN GSPISDGFFD 360 GLTLDGFGSL ENYCFQDLLS PSVSAAANSS GMDSFFNF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.2 | 9e-83 | C2H2 family protein |