PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178548.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 275aa MW: 28592 Da PI: 10.1453

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178548.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.6	2.7e-39	34	135	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...kaa 91 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s ++s+++ s++ k XP_027178548.1 34 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStvSPASARNSVGTLSAPldhK-- 126 789*************************************************************99999888777778888777555554321.. PP TCP 92 ksaakskksqksaa 105 + ++q++++ XP_027178548.1 127 -----PLSQQHQHQ 135 .....222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MSSASADGNG NGNGAIIDPS QRVTSSNNGS AALAVKKPPA KDRHSKVDGR GRRIRMPIIC 60 AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSTVSPA SARNSVGTLS 120 APLDHKPLSQ QHQHQQQPLI APTPFILGKR LRSSNEDDSI NEKDDASAAA AAATVVGSAA 180 LGGGFWALPA RPDLGQVWSF AAAAAQPEMV VPTLNAPQQS GMARFLQQST PMGEASAARV 240 GNYLPIAHQG HLNLLASLSG PPPPPSSEQR EGDAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-58	TCP family protein