PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178540.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 676aa MW: 74599.6 Da PI: 7.0882

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178540.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.8	8.4e-16	331	390	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027178540.1 331 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 390 789****************988886678446***********************98 PP
2	AP2	46.4	1e-14	435	484	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027178540.1 435 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 484 9*************988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MKSLSNGNTS NNSNTNWLGF SLSPQMNKMD GGAAAAASAD HPSQTALPCS NAVSSSVALS 60 FSHPSSHFNY PGIYRGIEGD NAAAFYSPVT VMPLKSDGSL CIMEAMNVSQ PQGMLSTPKL 120 ENFFGGTTMG THHYEAGERR SMALSLDSMY YHQSLNHAPS SQDFLNNLQG NSRQQEQQRQ 180 QQIQVQQYAE YSPFRCHEFY QASEHGSKET HLAETNLQLP IMADNDLSGM KNWVSRNYLG 240 DHSLEPKMTG GGGENRCESG SFGAMGYGDL QSLSLSMSPG SQSSCITGSQ QISPTGTECV 300 TIETKKRGPE KVEQKQIVHR KSIDTFGQRT SQFRGVTRHR WTGRYEAHLW DNSCKKEGQS 360 RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE NYQHELEEMK SMARQEYVAH 420 LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI 480 KFRGANAVTN FDISRYDVDR IMASSNLLAG ELARRNNNLE SSNDISIGNP SNLNCNEEVN 540 TTSKENNDNV LDWNVALHQF PLQKPGDPEH FKTSSFPVSV NDLMGMETLS TTAHQEAAGS 600 GKMMTHFSEP SSLVTSLSCS REGSPDKSNS LPMQFTVPPA ASKLFASPSP HTANPWISST 660 QMRPHVSVFA SWTDAS

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MKSLSNGNTS NNSNTNWLGF SLSPQMNKMD GGAAAAASAD HPSQTALPCS NAVSSSVALS  60
FSHPSSHFNY PGIYRGIEGD NAAAFYSPVT VMPLKSDGSL CIMEAMNVSQ PQGMLSTPKL  120
ENFFGGTTMG THHYEAGERR SMALSLDSMY YHQSLNHAPS SQDFLNNLQG NSRQQEQQRQ  180
QQIQVQQYAE YSPFRCHEFY QASEHGSKET HLAETNLQLP IMADNDLSGM KNWVSRNYLG  240
DHSLEPKMTG GGGENRCESG SFGAMGYGDL QSLSLSMSPG SQSSCITGSQ QISPTGTECV  300
TIETKKRGPE KVEQKQIVHR KSIDTFGQRT SQFRGVTRHR WTGRYEAHLW DNSCKKEGQS  360
RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE NYQHELEEMK SMARQEYVAH  420
LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI  480
KFRGANAVTN FDISRYDVDR IMASSNLLAG ELARRNNNLE SSNDISIGNP SNLNCNEEVN  540
TTSKENNDNV LDWNVALHQF PLQKPGDPEH FKTSSFPVSV NDLMGMETLS TTAHQEAAGS  600
GKMMTHFSEP SSLVTSLSCS REGSPDKSNS LPMQFTVPPA ASKLFASPSP HTANPWISST  660
QMRPHVSVFA SWTDAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-131	AP2 family protein