PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178539.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

AP2

Protein Properties

Length: 677aa MW: 74686.7 Da PI: 7.0882

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.8	8.4e-16	331	390	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_027178539.1 331 SQFRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 390 789****************988886678446***********************98 PP
2	AP2	41.7	2.8e-13	435	485	3	55
AP2 3 ykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_027178539.1 435 YRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 485 9**99******988532...5***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MKSLSNGNTS NNSNTNWLGF SLSPQMNKMD GGAAAAASAD HPSQTALPCS NAVSSSVALS 60 FSHPSSHFNY PGIYRGIEGD NAAAFYSPVT VMPLKSDGSL CIMEAMNVSQ PQGMLSTPKL 120 ENFFGGTTMG THHYEAGERR SMALSLDSMY YHQSLNHAPS SQDFLNNLQG NSRQQEQQRQ 180 QQIQVQQYAE YSPFRCHEFY QASEHGSKET HLAETNLQLP IMADNDLSGM KNWVSRNYLG 240 DHSLEPKMTG GGGENRCESG SFGAMGYGDL QSLSLSMSPG SQSSCITGSQ QISPTGTECV 300 TIETKKRGPE KVEQKQIVHR KSIDTFGQRT SQFRGVTRHR WTGRYEAHLW DNSCKKEGQS 360 RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE NYQHELEEMK SMARQEYVAH 420 LRRKSSGFSR GASMYRGVTS RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA 480 IKFRGANAVT NFDISRYDVD RIMASSNLLA GELARRNNNL ESSNDISIGN PSNLNCNEEV 540 NTTSKENNDN VLDWNVALHQ FPLQKPGDPE HFKTSSFPVS VNDLMGMETL STTAHQEAAG 600 SGKMMTHFSE PSSLVTSLSC SREGSPDKSN SLPMQFTVPP AASKLFASPS PHTANPWISS 660 TQMRPHVSVF ASWTDAS

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MKSLSNGNTS NNSNTNWLGF SLSPQMNKMD GGAAAAASAD HPSQTALPCS NAVSSSVALS  60
FSHPSSHFNY PGIYRGIEGD NAAAFYSPVT VMPLKSDGSL CIMEAMNVSQ PQGMLSTPKL  120
ENFFGGTTMG THHYEAGERR SMALSLDSMY YHQSLNHAPS SQDFLNNLQG NSRQQEQQRQ  180
QQIQVQQYAE YSPFRCHEFY QASEHGSKET HLAETNLQLP IMADNDLSGM KNWVSRNYLG  240
DHSLEPKMTG GGGENRCESG SFGAMGYGDL QSLSLSMSPG SQSSCITGSQ QISPTGTECV  300
TIETKKRGPE KVEQKQIVHR KSIDTFGQRT SQFRGVTRHR WTGRYEAHLW DNSCKKEGQS  360
RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE NYQHELEEMK SMARQEYVAH  420
LRRKSSGFSR GASMYRGVTS RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA  480
IKFRGANAVT NFDISRYDVD RIMASSNLLA GELARRNNNL ESSNDISIGN PSNLNCNEEV  540
NTTSKENNDN VLDWNVALHQ FPLQKPGDPE HFKTSSFPVS VNDLMGMETL STTAHQEAAG  600
SGKMMTHFSE PSSLVTSLSC SREGSPDKSN SLPMQFTVPP AASKLFASPS PHTANPWISS  660
TQMRPHVSVF ASWTDAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-129	AP2 family protein