PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178500.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 1040aa MW: 114534 Da PI: 6.8423

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.6	3.1e-06	71	127	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e +e+++ g+t +qV+ +F +Ra+ +k XP_027178500.1 71 KRPRDLLNPKAIKYMQSIFSVKDAITKKETREISALFGVTATQVREFFTVQRARVRK 127 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence
MELQLANENQ LELVVSNSPT SLQDLLDSQT DLFRGQIDEL ENIVLTQCQL TGVNPLSQEM 60 AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDAITKKET REISALFGVT ATQVREFFTV 120 QRARVRKFVR LSIEKSNRSS SCKEVLDGIP QGCDPNEPLT PVPLDSVGPT STEEGPTSLT 180 QNEVLPSADQ SDKYFLDNIF SLMRKEESFS GQVKLMEWIL QIQNSSVLYW FLNNGGVMIL 240 ATWLTQAALE EQTSVLRVIL KVLCHLPLQK ALPVHMSAIL QSVNSLRFYR ISDVSNRARV 300 LLSRWSKAFA RSQTLRKSNG TKSAIDAQDE MLLKQSIHEV MGNESWDSKI DVLEDNSTLM 360 DESLGNFRKL ESQPAKLLTA SADDQNRKLI RENRERRKVL LVEQPGQKSA GRTTQTVRST 420 TAPQGRPLSA DDIQKAKMRA QFMQSKYGKT NSISDASPQM QPEGANKSAL SNTSILVPPS 480 KAHTGTKIEE TNKSGCIPVG VANPEDASVD KQNNCHSEEP PWKKCKRFQI PWQIPPEIGI 540 SVSWRVGAGE NSKEVEVQKK RIHRERETVY KTFQEIPSDP KEPWDQEIDY DDSLTAEIPI 600 EQLPDGEFAE ASVSPRENER TAGTSGNSSS LIAGGSMPEP DLELLAALLK NPELVFALTS 660 GQAGNLSNEE TIKLLDMIKA NEMNSLANIT ASSGKSKPEE KVEVSLPSPT PSSDPVTSAR 720 KPDYAKNPFS QQKTTLNNEI LGIPGTAAIR SQESVPASNV VQSHNLPTGA MVAEPSTTFP 780 QLAQHAIPHA LLSEEKLRAS GLVQPQVLPA TVLAPQQAAT VQQLAQQMAP QVLGSHEQRL 840 LPLTSSLHHN IPAYASNAQL KSSSELLLNM NNTSLSRSPP LTNSMNGVAP AMVVNPSSMS 900 LVGSPLRPQT QMQPSYAPEA PLAHSWRPRP GLDPISRQNN VTPDEYEAFV GASARAPVAR 960 SSWEKNDLMV GPDFESWSPE NSPTRSHGYV PGWNVQEPMV NPGQSYRPER PIYRHAGYPP 1020 SSGYHDPGIS GTKRWRDRRR

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence

MELQLANENQ LELVVSNSPT SLQDLLDSQT DLFRGQIDEL ENIVLTQCQL TGVNPLSQEM  60
AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDAITKKET REISALFGVT ATQVREFFTV  120
QRARVRKFVR LSIEKSNRSS SCKEVLDGIP QGCDPNEPLT PVPLDSVGPT STEEGPTSLT  180
QNEVLPSADQ SDKYFLDNIF SLMRKEESFS GQVKLMEWIL QIQNSSVLYW FLNNGGVMIL  240
ATWLTQAALE EQTSVLRVIL KVLCHLPLQK ALPVHMSAIL QSVNSLRFYR ISDVSNRARV  300
LLSRWSKAFA RSQTLRKSNG TKSAIDAQDE MLLKQSIHEV MGNESWDSKI DVLEDNSTLM  360
DESLGNFRKL ESQPAKLLTA SADDQNRKLI RENRERRKVL LVEQPGQKSA GRTTQTVRST  420
TAPQGRPLSA DDIQKAKMRA QFMQSKYGKT NSISDASPQM QPEGANKSAL SNTSILVPPS  480
KAHTGTKIEE TNKSGCIPVG VANPEDASVD KQNNCHSEEP PWKKCKRFQI PWQIPPEIGI  540
SVSWRVGAGE NSKEVEVQKK RIHRERETVY KTFQEIPSDP KEPWDQEIDY DDSLTAEIPI  600
EQLPDGEFAE ASVSPRENER TAGTSGNSSS LIAGGSMPEP DLELLAALLK NPELVFALTS  660
GQAGNLSNEE TIKLLDMIKA NEMNSLANIT ASSGKSKPEE KVEVSLPSPT PSSDPVTSAR  720
KPDYAKNPFS QQKTTLNNEI LGIPGTAAIR SQESVPASNV VQSHNLPTGA MVAEPSTTFP  780
QLAQHAIPHA LLSEEKLRAS GLVQPQVLPA TVLAPQQAAT VQQLAQQMAP QVLGSHEQRL  840
LPLTSSLHHN IPAYASNAQL KSSSELLLNM NNTSLSRSPP LTNSMNGVAP AMVVNPSSMS  900
LVGSPLRPQT QMQPSYAPEA PLAHSWRPRP GLDPISRQNN VTPDEYEAFV GASARAPVAR  960
SSWEKNDLMV GPDFESWSPE NSPTRSHGYV PGWNVQEPMV NPGQSYRPER PIYRHAGYPP  1020
SSGYHDPGIS GTKRWRDRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-161	HB-other family protein