PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027178494.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HB-other | ||||||||
Protein Properties | Length: 1045aa MW: 114963 Da PI: 6.9623 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 18.6 | 3.1e-06 | 71 | 127 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e +e+++ g+t +qV+ +F +Ra+ +k XP_027178494.1 71 KRPRDLLNPKAIKYMQSIFSVKDAITKKETREISALFGVTATQVREFFTVQRARVRK 127 799***************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1045 aa Download sequence |
MELQLANENQ LELVVSNSPT SLQDLLDSQT DLFRGQIDEL ENIVLTQCQL TGVNPLSQEM 60 AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDAITKKET REISALFGVT ATQVREFFTV 120 QRARVRKFVR LSIEKSNRSS SCKEVLDGIP QGCDPNEPLT PVPLDSVGPT STEEGPTSLT 180 QNEVLPSADQ SDKYFLDNIF SLMRKEESFS GQVKLMEWIL QIQNSSVLYW FLNNGGVMIL 240 ATWLTQAALE EQTSVLRVIL KVLCHLPLQK ALPVHMSAIL QSVNSLRFYR ISDVSNRARV 300 LLSRWSKAFA RSQTLRKSNG TKSAIDAQDE MLLKQSIHEV MGNESWDSKI DVLEDNSTLM 360 DESLGNFRKL ESQPAKLLTA SADDQNRKLI RGALTSQNRE RRKVLLVEQP GQKSAGRTTQ 420 TVRSTTAPQG RPLSADDIQK AKMRAQFMQS KYGKTNSISD ASPQMQPEGA NKSALSNTSI 480 LVPPSKAHTG TKIEETNKSG CIPVGVANPE DASVDKQNNC HSEEPPWKKC KRFQIPWQIP 540 PEIGISVSWR VGAGENSKEV EVQKKRIHRE RETVYKTFQE IPSDPKEPWD QEIDYDDSLT 600 AEIPIEQLPD GEFAEASVSP RENERTAGTS GNSSSLIAGG SMPEPDLELL AALLKNPELV 660 FALTSGQAGN LSNEETIKLL DMIKANEMNS LANITASSGK SKPEEKVEVS LPSPTPSSDP 720 VTSARKPDYA KNPFSQQKTT LNNEILGIPG TAAIRSQESV PASNVVQSHN LPTGAMVAEP 780 STTFPQLAQH AIPHALLSEE KLRASGLVQP QVLPATVLAP QQAATVQQLA QQMAPQVLGS 840 HEQRLLPLTS SLHHNIPAYA SNAQLKSSSE LLLNMNNTSL SRSPPLTNSM NGVAPAMVVN 900 PSSMSLVGSP LRPQTQMQPS YAPEAPLAHS WRPRPGLDPI SRQNNVTPDE YEAFVGASAR 960 APVARSSWEK NDLMVGPDFE SWSPENSPTR SHGYVPGWNV QEPMVNPGQS YRPERPIYRH 1020 AGYPPSSGYH DPGISGTKRW RDRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-164 | HB-other family protein |