PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027178229.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 554aa MW: 61897.9 Da PI: 5.5659 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 300.1 | 5.3e-92 | 196 | 553 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 v+ L++ Ae++++++l+l++ +L rl+++ + p+g+p+qR+a+yf+eAL++ l++ ++ ++++++++++++++a+k+fs++sP++ fs XP_027178229.1 196 VDELIRLAECFETNSLHLTHVILGRLNQRlRGPTGKPLQRAAFYFKEALQTLLTG------STRLTQPSTSSEVIQSIKAHKAFSNISPVPMFSS 284 678*************************99*************************......556666777778********************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 +taNqa+leav+g+ +H+iDfdi+ G++W++++++La+++ + pp lRiT+v+ +e + e + ++e+L++fA+el++ f+ ++++++++ XP_027178229.1 285 FTANQAVLEAVDGSMLIHVIDFDIGLGGHWASFMKELADKAelrkAAPPVLRITAVVGEE--YAMESKLIRENLSQFARELNIGFDLDFVLVRTF 377 **************************************8776666889**********66..999999*************************** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpres 279 e +++++++ +gE++a+ l+ ++r + + +L+ ++++sP+vvv+ + e ++ sF + +++ le+ys+l++slea + XP_027178229.1 378 EFCSFKAIKFMEGEKVAILLSPTIFRRV---------GTGFLSDLRRVSPHVVVHLDCEGLIgfGTMSFRQTLIDGLEFYSTLLESLEAANGGGG 463 ************************9998.........368*******************555449**********************66544332 PP GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372 ++++k+E +++ ++i ++v +g++ + Wre++ +aG++pv+ls++a qa++l+r+v+++g++v ++++++l+W++r+Lv++Sa XP_027178229.1 464 adDWMNKMESFVIYPKILEAVGVAGRR-------GAPWREAFVAAGLRPVALSQFADFQAECLIRRVQVRGFHVARRQAEMLLCWHERALVATSA 551 3599*********************98.......89*********************************************************** PP GRAS 373 Wr 374 Wr XP_027178229.1 552 WR 553 *8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence |
MKVPFIQNQP SILNSTKQVN CNDNNNDLRT TTTTTSTNSN TFLGYEPKSV LELRQSPSPV 60 TEIPSSNTDI STVWDDTGLQ LEDHVLNHFE EDWDSLMREL GLPEDSNSTP TSRPTTFSHS 120 QFTPSGSQVQ FQNLPEFPPT HNSFDSTLFV PSDFTLPDIS TYPSSFNDSS INSLGLSHDT 180 HHHNTSLDWN LGFDYVDELI RLAECFETNS LHLTHVILGR LNQRLRGPTG KPLQRAAFYF 240 KEALQTLLTG STRLTQPSTS SEVIQSIKAH KAFSNISPVP MFSSFTANQA VLEAVDGSML 300 IHVIDFDIGL GGHWASFMKE LADKAELRKA APPVLRITAV VGEEYAMESK LIRENLSQFA 360 RELNIGFDLD FVLVRTFEFC SFKAIKFMEG EKVAILLSPT IFRRVGTGFL SDLRRVSPHV 420 VVHLDCEGLI GFGTMSFRQT LIDGLEFYST LLESLEAANG GGGADDWMNK MESFVIYPKI 480 LEAVGVAGRR GAPWREAFVA AGLRPVALSQ FADFQAECLI RRVQVRGFHV ARRQAEMLLC 540 WHERALVATS AWRY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-143 | GRAS family protein |