PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027178002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 26210.3 Da PI: 10.7215 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00044 | 126 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +Lk+H r H XP_027178002.1 126 YICSVCGRKCKTHLDLKKHFRQlH 149 89*****************99877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
KPPKPLSLSD PNSSGKWANI RACAAEAAAE SEIDMVRTKE GIYTAKPKKV VVLWDLDNKP 60 PRGPPYQAAM ALKKVAQHFG NLVDISAYAN RHAFIHLPQW VVEERRERRR MDILERKGVS 120 TPSEPYICSV CGRKCKTHLD LKKHFRQLHE RERQKKLNRM RSLKGKKRQR FKERFIDGNE 180 KYNEAARTLT SPKVGYGLAS ELRRAGVFVK TVEDKPQENF TNIPKPHS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-104 | C2H2 family protein |