PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177479.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 359aa MW: 41763.8 Da PI: 4.2377

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	37	8.8e-12	115	200	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e +L+e+ e+ +l+r++l++ +W+e ++k+ + g er+ +C++ ++ l+++ykk+++ ++k + s++++f++++ XP_027177479.1 115 WNEEESFVLLEVWGERYLELGRRSLRAEDWAELAEKVsEMSGRERNEMECRNQLDVLKQKYKKERAKMEKVGGGFLSKWVFFKKMD 200 ***********************************445688***********************999**********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDDSDEEGPY LTKPTFRSKP AIRNPHSYPL NTHYTTNDAI FAQEDDEFED DEESPQFQNA 60 QSGYYYQSFY EDEPKRSKKK RKLESLVPNY ELAPRAGLNA PKGSSLGGGS SRDSWNEEES 120 FVLLEVWGER YLELGRRSLR AEDWAELAEK VSEMSGRERN EMECRNQLDV LKQKYKKERA 180 KMEKVGGGFL SKWVFFKKMD VLLNLRMRGH VGLGCGVDSG EYVFMNPRVY LDKSNVLDEM 240 RDSPGVSDEE NEEEEEGLGL GKDEEDGESA RLLADSIQRF GEIYEKIESS KRRQMMELEK 300 MRRDFQRDLE LQKKQIVERA QAEIAKIREG VEEEDDDEEE DDDEEEEDDD DVQNENIQV

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDDSDEEGPY LTKPTFRSKP AIRNPHSYPL NTHYTTNDAI FAQEDDEFED DEESPQFQNA  60
QSGYYYQSFY EDEPKRSKKK RKLESLVPNY ELAPRAGLNA PKGSSLGGGS SRDSWNEEES  120
FVLLEVWGER YLELGRRSLR AEDWAELAEK VSEMSGRERN EMECRNQLDV LKQKYKKERA  180
KMEKVGGGFL SKWVFFKKMD VLLNLRMRGH VGLGCGVDSG EYVFMNPRVY LDKSNVLDEM  240
RDSPGVSDEE NEEEEEGLGL GKDEEDGESA RLLADSIQRF GEIYEKIESS KRRQMMELEK  300
MRRDFQRDLE LQKKQIVERA QAEIAKIREG VEEEDDDEEE DDDEEEEDDD DVQNENIQV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	82	PKRSKKKRK
2	75	81	KRSKKKR
3	78	83	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	7e-82	Trihelix family protein