PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177085.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 533aa MW: 58050.8 Da PI: 6.9666

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.7	1.3e-17	150	236	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea++e+ l+rg+l++ +Weev+ + r ++ ++s +qCk+k +nl+kryk ++++ +++ s s++p+f+q+e XP_027177085.1 150 EWSDTAIACLLEAYTEKFMMLNRGNLRGRDWEEVAVMVseRCEKQTKSVEQCKNKVDNLKKRYKLERHRLSNG-GVSASHWPWFKQME 236 5********************************999767778899********************99.566679*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MASCDDDFSL LGDDNATTSN PNPNLIHHRQ SFTHRNLSAP NDDDDDVVSA DADGYSDGAF 60 CSSQPNPKLA NASNATSFHV VNVNPYDPDP NPFDNEHDPT KSRANNHNHT PNDKRSDREE 120 VSDSGTPYSY KRPRVSSSAT GGEYRKDREE WSDTAIACLL EAYTEKFMML NRGNLRGRDW 180 EEVAVMVSER CEKQTKSVEQ CKNKVDNLKK RYKLERHRLS NGGVSASHWP WFKQMEQIVG 240 NSLSGKAATD DDKSVGGTAN TGRQSKRYGT TTVSPGPQIN SIKSKATSAR WRRVVFKISG 300 GTLAGTAPQN IDPKVAMLVA REVSIACRMG VEVPTRKLVV GGRNFFCGHT WVTTTGLDRF 360 AAYQAGMMAT VMNSILLQSA FEKLGVQTRV QSAYSMPEVA EPYCRLRAIR HLEKGRVVIF 420 GGIGAGTGNP LFSTDLAAAL RASEINADAV LKGTNVDGVF ICDSRNNNIA ADHISFTDLA 480 SGGACPMDMM AIRSCEDNGI PVVIFNLHEP GNISRALCGE QVGTLIDQTG SVN

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MASCDDDFSL LGDDNATTSN PNPNLIHHRQ SFTHRNLSAP NDDDDDVVSA DADGYSDGAF  60
CSSQPNPKLA NASNATSFHV VNVNPYDPDP NPFDNEHDPT KSRANNHNHT PNDKRSDREE  120
VSDSGTPYSY KRPRVSSSAT GGEYRKDREE WSDTAIACLL EAYTEKFMML NRGNLRGRDW  180
EEVAVMVSER CEKQTKSVEQ CKNKVDNLKK RYKLERHRLS NGGVSASHWP WFKQMEQIVG  240
NSLSGKAATD DDKSVGGTAN TGRQSKRYGT TTVSPGPQIN SIKSKATSAR WRRVVFKISG  300
GTLAGTAPQN IDPKVAMLVA REVSIACRMG VEVPTRKLVV GGRNFFCGHT WVTTTGLDRF  360
AAYQAGMMAT VMNSILLQSA FEKLGVQTRV QSAYSMPEVA EPYCRLRAIR HLEKGRVVIF  420
GGIGAGTGNP LFSTDLAAAL RASEINADAV LKGTNVDGVF ICDSRNNNIA ADHISFTDLA  480
SGGACPMDMM AIRSCEDNGI PVVIFNLHEP GNISRALCGE QVGTLIDQTG SVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein