PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027176947.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 365aa    MW: 41209.7 Da    PI: 6.7494
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027176947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00011286308123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_027176947.1 286 FMCRKCGKAFAVRGDWRTHEKNC 308
                     89*****************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MTDPYSNFYN QWFKFNTPYP FSSSISSNHQ PPNYVQNFYY SNNCIQYNGT STSFHSHNSP  60
PSSPPLREAL PLLSLSPTRH DHGAISEEPC CQEMDMERSS SSKSKEDSQK TLFPGAVHEV  120
HEEAEAEDDD EDVTVALHIG LPNPSAADLA SVLSSSAETT DKDHDQDGDV SAAGYHPIMN  180
RLNKGQYWIP TPSQILIGPT QFSCPVCCKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP  240
TGMLRLPCYC CAPGCRNNID HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD  300
WRTHEKNCGK LWYCICGSDF KHKRSLKDHI KAFGNGHGAY GVNSFEEDDE PASEIEQDDD  360
QSMHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-131C2H2 family protein