PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027176521.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 365aa MW: 41385.6 Da PI: 8.693

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027176521.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.4	2.1e-19	68	150	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ +Li+a++e++ +l++g+lk+ +Weevs+ + ++ g+ ++s++qC++k+e+l+kry++++ ++++yf+ ++ XP_027176521.1 68 WTHQETICLIQAYQEKWYSLKKGQLKASQWEEVSITVaARCGYdvpSKSATQCRHKIEKLRKRYRAERLKPYP------NSWQYFELMD 150 **********************************966778855567***************98766654......3488888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MDNPSSPLLL PPSNLTQPTA TAITTSNLPS PDIKPKLELI PAFNPNPNSN SNSHTPTSPP 60 KKTQPLPWTH QETICLIQAY QEKWYSLKKG QLKASQWEEV SITVAARCGY DVPSKSATQC 120 RHKIEKLRKR YRAERLKPYP NSWQYFELMD RMERGPLPIS AARPVAAVKY QKNANSVGGG 180 GNYDESDSEE GGGHYGGLEV KKNKLKSINN IVRGGEIGVS GSSSSNRNVN RMGMNRNFGG 240 VGESARVLRG LRTPMNQKRK GYFQNDESDE EDEEERDEEE GLEEEQEEDK EVVVGRELAS 300 EIRGFADRFM RMENKKIEMM RETERYRMEM EKKRMDMILE AQRKVVDTIG RAFGADKKVK 360 MAHEN

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MDNPSSPLLL PPSNLTQPTA TAITTSNLPS PDIKPKLELI PAFNPNPNSN SNSHTPTSPP  60
KKTQPLPWTH QETICLIQAY QEKWYSLKKG QLKASQWEEV SITVAARCGY DVPSKSATQC  120
RHKIEKLRKR YRAERLKPYP NSWQYFELMD RMERGPLPIS AARPVAAVKY QKNANSVGGG  180
GNYDESDSEE GGGHYGGLEV KKNKLKSINN IVRGGEIGVS GSSSSNRNVN RMGMNRNFGG  240
VGESARVLRG LRTPMNQKRK GYFQNDESDE EDEEERDEEE GLEEEQEEDK EVVVGRELAS  300
EIRGFADRFM RMENKKIEMM RETERYRMEM EKKRMDMILE AQRKVVDTIG RAFGADKKVK  360
MAHEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	5e-27	Trihelix family protein