PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027176401.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 498aa MW: 56204.6 Da PI: 6.3183

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027176401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.4	4.5e-24	130	230	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_027176401.1 130 KWTDNMVRLLIMVVFYIGDEVGSEGndpagkkkgaggvlQKKGKWKSVSRAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQS 224 7************999999964336777789999999******************************************55**** PP trihelix 81 yfdqle 86 ++d ++ XP_027176401.1 225 LLDTMD 230 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MESDGMAAGG GMYSNMGSGM LGLEISLHHQ LPQGQTTQNP HHMQPQPPQQ QLQPPPPPSH 60 HPMVVFGHHE ADQHHHPQHA QLSSKQAYPF SAKAKNQALA PSDDDEPGLG TENSADTDGM 120 RKISPWQRMK WTDNMVRLLI MVVFYIGDEV GSEGNDPAGK KKGAGGVLQK KGKWKSVSRA 180 MMERGFFVSP QQCEDKFNDL NKRYKRVNDI LGKGTACRVV ENQSLLDTMD HLSAKMKEEV 240 KKLLSSKHLF FREMCAYHNS CGHGGTGGAS SSGAAQQSTE VGGVEPSSQM QQQQRCLHTS 300 ENASTPPNLA RCEVEGSKTT KGRSFEEDND EDDDDDDEYE DDVVEGGASG YEHGHPEEDD 360 DTPDERCSRK RQRKGIFLPP LVQQMSTELM KVLQDESKNS AEKRQWIKNR LLQLEERHVG 420 FQSEAFELEK QRLKWVKFSS KKEREMERDK LSNDRLRLEN ERMMLLIRQK ELELLDVYQQ 480 QQQQHQSSRK SDPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MESDGMAAGG GMYSNMGSGM LGLEISLHHQ LPQGQTTQNP HHMQPQPPQQ QLQPPPPPSH  60
HPMVVFGHHE ADQHHHPQHA QLSSKQAYPF SAKAKNQALA PSDDDEPGLG TENSADTDGM  120
RKISPWQRMK WTDNMVRLLI MVVFYIGDEV GSEGNDPAGK KKGAGGVLQK KGKWKSVSRA  180
MMERGFFVSP QQCEDKFNDL NKRYKRVNDI LGKGTACRVV ENQSLLDTMD HLSAKMKEEV  240
KKLLSSKHLF FREMCAYHNS CGHGGTGGAS SSGAAQQSTE VGGVEPSSQM QQQQRCLHTS  300
ENASTPPNLA RCEVEGSKTT KGRSFEEDND EDDDDDDEYE DDVVEGGASG YEHGHPEEDD  360
DTPDERCSRK RQRKGIFLPP LVQQMSTELM KVLQDESKNS AEKRQWIKNR LLQLEERHVG  420
FQSEAFELEK QRLKWVKFSS KKEREMERDK LSNDRLRLEN ERMMLLIRQK ELELLDVYQQ  480
QQQQHQSSRK SDPSSITG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-75	Trihelix family protein