PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027175294.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 465aa MW: 51132.8 Da PI: 8.9585

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027175294.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.3e-32	187	243	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geH h+k XP_027175294.1 187 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHSHPK 243 9*************************************.*************85 PP
2	WRKY	102.7	2e-32	382	439	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k ver+++dp+++ +tYeg+Hnhe XP_027175294.1 382 RDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKYVERTSDDPNAFMTTYEGKHNHE 439 7********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MEIKETEKVA IAKPVASRPT CSSFKSFSEL LAGAINASPS SSCSEAAVTA IRPRTVRFKP 60 AVDHPSAGVA ASQANLCGAA VSSPTAKDLK ADGKCKVVYK PMAKLVSKTT VSLLANMEQE 120 LAEVEANFQL PNLVKPQCDN RSELHQNFLS AAQKNKRVEP SNVTTQNLEE DQRSLAHTAN 180 GDRPSYDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCPVKK KVERSLDGQI AEIVYKGEHS 240 HPKTQPVRRN SSDGHWQGTS GNESNNPLCR NQHSDKNECY EGTMENPNEF GFLAHSSYSA 300 GAPSCMHPTN GASNFGVSNL DNSSCHSGEF DEGREGLEGE TDGPKRKRRK NDNQSNVAGT 360 AAEGAQEPQV LGQNSTDSEI IRDGFRWRKY GQKVVKGNPY PRSYYRCTSL KCNVRKYVER 420 TSDDPNAFMT TYEGKHNHEM PTKSTSSLAA KTSTKALGTK KIYLD

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MEIKETEKVA IAKPVASRPT CSSFKSFSEL LAGAINASPS SSCSEAAVTA IRPRTVRFKP  60
AVDHPSAGVA ASQANLCGAA VSSPTAKDLK ADGKCKVVYK PMAKLVSKTT VSLLANMEQE  120
LAEVEANFQL PNLVKPQCDN RSELHQNFLS AAQKNKRVEP SNVTTQNLEE DQRSLAHTAN  180
GDRPSYDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCPVKK KVERSLDGQI AEIVYKGEHS  240
HPKTQPVRRN SSDGHWQGTS GNESNNPLCR NQHSDKNECY EGTMENPNEF GFLAHSSYSA  300
GAPSCMHPTN GASNFGVSNL DNSSCHSGEF DEGREGLEGE TDGPKRKRRK NDNQSNVAGT  360
AAEGAQEPQV LGQNSTDSEI IRDGFRWRKY GQKVVKGNPY PRSYYRCTSL KCNVRKYVER  420
TSDDPNAFMT TYEGKHNHEM PTKSTSSLAA KTSTKALGTK KIYLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	351	PKRKRRKN
2	345	350	KRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.1	1e-109	WRKY family protein