PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027175180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 361aa    MW: 40146.8 Da    PI: 10.3289
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027175180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0015173123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k F++   L  H  +H
  XP_027175180.1 51 FECKTCNKKFPTFQALGGHRASH 73
                    89**********99999998887 PP

2zf-C2H2110.001496118123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp Cg  F+    L  H+r+H
  XP_027175180.1  96 HECPFCGLEFPLGQALGGHMRRH 118
                     78********************9 PP

3zf-C2H211.40.001241263123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k Fs+   L  H  +H
  XP_027175180.1 241 FTCKTCNKQFSSFQALGGHRASH 263
                     89**********99999998887 PP

4zf-C2H210.70.0016287309123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F+    L  H+r+H
  XP_027175180.1 287 HECSICGLEFPLGQALGGHMRRH 309
                     78********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MTVKRSREEA PAAETVEETA AINLLMLLSR VGEATTSAAA DQAATPSGRV FECKTCNKKF  60
PTFQALGGHR ASHKKLKLMA ELLTQPSNSP RKPKKHECPF CGLEFPLGQA LGGHMRRHRA  120
AMLEGRREID ESHGRKVAVP VLKRSNSSKR VFGLDLNLSP FENDLRQLMK APLRFENSQI  180
QKERFVNGTP IADRNTTLLY MTVKRSREDR EVEAFAMANC LMLLSNMAKT TSSPPSLDRV  240
FTCKTCNKQF SSFQALGGHR ASHKRTRLVA ADGLHDQNHS PAKPKTHECS ICGLEFPLGQ  300
ALGGHMRRHR NDGTAGDKSE ETQSGSQKSN SHSDSHRALL LDLNLTPREN EFKFGRLDSF  360
M
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.14e-34C2H2 family protein