PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027175139.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 551aa MW: 59066.3 Da PI: 9.6406

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027175139.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027175139.1 75 FICEICNKGFQREQNLQLHRRGH 97 89*******************88 PP
2	zf-C2H2	12.6	0.00042	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ XP_027175139.1 152 WKCEKCSKKYAVQSDWKAHSKTC 174 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MLVMSANMFT VPPSVNGFSP EPADTNPTSS TSNPKSNSTT TNPAGKKKRN LPGNPDPDAE 60 VMALSPKTLM ATNRFICEIC NKGFQREQNL QLHRRGHNLP WKLKQRTTKE PVKRKVYICP 120 EKTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK 180 CDCGTLFSRK DSFITHRAFC DALAEESARI TSVAANNFNF KTDQQHLNGG ALLNHPGSFP 240 HGLSGPTGIS QIGVDFATGN QLKPRLSLWL DQASNHQLNH ADMPPSQNLY MPSASHHDIM 300 QMSSAADVFG NYGMPWQQLE KSSAPPSSAP SSSAANLSLS PMMPQQVLKD EGAGGSINTQ 360 TLSSLYSPGA ASNNDISHSK SSATPMSATA LLQKAAQMGS SKSTAAIFGN GFGIMNPSSS 420 SSSPAAAANM IAFSSGLAQN RTEMMQVFGK QTDNMMGGGS NMTSSTSSTL TNNLDHQPMV 480 QTSTAADSQS VASLGGFHRH PGFNAVVEHA SLTRDFLGMG GDGGRPFLPH ELAKFASMSS 540 AMGLGHFSSN H

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MLVMSANMFT VPPSVNGFSP EPADTNPTSS TSNPKSNSTT TNPAGKKKRN LPGNPDPDAE  60
VMALSPKTLM ATNRFICEIC NKGFQREQNL QLHRRGHNLP WKLKQRTTKE PVKRKVYICP  120
EKTCVHHDPS RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKTCGTREYK  180
CDCGTLFSRK DSFITHRAFC DALAEESARI TSVAANNFNF KTDQQHLNGG ALLNHPGSFP  240
HGLSGPTGIS QIGVDFATGN QLKPRLSLWL DQASNHQLNH ADMPPSQNLY MPSASHHDIM  300
QMSSAADVFG NYGMPWQQLE KSSAPPSSAP SSSAANLSLS PMMPQQVLKD EGAGGSINTQ  360
TLSSLYSPGA ASNNDISHSK SSATPMSATA LLQKAAQMGS SKSTAAIFGN GFGIMNPSSS  420
SSSPAAAANM IAFSSGLAQN RTEMMQVFGK QTDNMMGGGS NMTSSTSSTL TNNLDHQPMV  480
QTSTAADSQS VASLGGFHRH PGFNAVVEHA SLTRDFLGMG GDGGRPFLPH ELAKFASMSS  540
AMGLGHFSSN H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-101	C2H2 family protein