PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174798.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 512aa MW: 56629.3 Da PI: 7.6424

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174798.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.5	2.3e-16	153	199	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd l ++vk +G + W+ Ia++m gR +kqc++rw+++l XP_027174798.1 153 KGQWTEEEDNTLRKLVKHFGVKKWAQIAEKMV-GRAGKQCRERWHNHL 199 799***************************.***********97 PP
2	Myb_DNA-binding	54.3	3.1e-17	205	247	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE++llv+a+ + G++ W+ I ++++ gRt++++k++w+ XP_027174798.1 205 KDAWSQEEEKLLVEAHIEVGNR-WAEIGKRIP-GRTENSIKNHWN 247 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MEGGGLGGSF PYGNYCQRDH HLGLPLLKPR PPLTAIDRFL CGQRHFSQLE ILANFKNKAT 60 LVPVNSDFVS SSSGGAIHGH AGGGGVFSWP ITLPPSHDTS SSVNGVLFNK ESTPNLSPEM 120 NPSVGLEKEE DLPRVPRGTG RRGKGDPSVA LIKGQWTEEE DNTLRKLVKH FGVKKWAQIA 180 EKMVGRAGKQ CRERWHNHLR PDIKKDAWSQ EEEKLLVEAH IEVGNRWAEI GKRIPGRTEN 240 SIKNHWNATK RRQNSKKKFK KPEGVHNGRN QSTILQEYIK STCFNDDSLI NISTGPSSTT 300 MIPVNSAATQ ITPSNSVISE DPTSAHFNML YPELSQSASG DSSSYLAQHS YDDEMNFMQN 360 LFGSYNLNVS TSCKNDKGKA PLDIGINQKD KCSTSFNSSG YNSTNSNNQD FGGNLDYGFF 420 PSFAEPSLPT RTYLGDQESN QPIRMYSDAY LSHILDGGNV LCALPEVYPS NMNMEKMMID 480 QASPSVGKEV DLIEMISNSQ FARKNATNNF VF

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MEGGGLGGSF PYGNYCQRDH HLGLPLLKPR PPLTAIDRFL CGQRHFSQLE ILANFKNKAT  60
LVPVNSDFVS SSSGGAIHGH AGGGGVFSWP ITLPPSHDTS SSVNGVLFNK ESTPNLSPEM  120
NPSVGLEKEE DLPRVPRGTG RRGKGDPSVA LIKGQWTEEE DNTLRKLVKH FGVKKWAQIA  180
EKMVGRAGKQ CRERWHNHLR PDIKKDAWSQ EEEKLLVEAH IEVGNRWAEI GKRIPGRTEN  240
SIKNHWNATK RRQNSKKKFK KPEGVHNGRN QSTILQEYIK STCFNDDSLI NISTGPSSTT  300
MIPVNSAATQ ITPSNSVISE DPTSAHFNML YPELSQSASG DSSSYLAQHS YDDEMNFMQN  360
LFGSYNLNVS TSCKNDKGKA PLDIGINQKD KCSTSFNSSG YNSTNSNNQD FGGNLDYGFF  420
PSFAEPSLPT RTYLGDQESN QPIRMYSDAY LSHILDGGNV LCALPEVYPS NMNMEKMMID  480
QASPSVGKEV DLIEMISNSQ FARKNATNNF VF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58850.1	5e-60	MYB family protein