PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174586.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-PHD

Protein Properties

Length: 478aa MW: 53320.1 Da PI: 6.513

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174586.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	35.1	2.3e-11	335	382	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +f ++ +e L +F++n ps++ r L+++lgL+ ++V WF+N R+ XP_027174586.1 335 RFPRHVVEKLRVVFAENELPSRTIRDNLSRQLGLESEKVNKWFKNARY 382 6788999***************************************97 PP
2	PHD	37.3	6.3e-13	75	129	1	50
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ + ++++vlCd +C+ +fH+kCl+++l++e++p g w+C+ Ck+ XP_027174586.1 75 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLSTENIPPGdeGWFCRYCKS 129 588888854455******56****************9999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MSINTYIMVM YIYLFSLSRE KIKPEKELER AKKQILKCKL GIREAICQLD GLSSVGHIED 60 SAVAPDGSVH HEHIICAKCK LREAFPDNDI VLCDGTCNCA FHQKCLDPPL STENIPPGDE 120 GWFCRYCKSK MEILEVTNAH LGTNFPLDSN WQDIFKEEAA LLDGKESLLC PEEEWPSDDS 180 EDVDYDPEGR EFHSPNSMSG SGSDSSVDAS SSNSLSSIED DVLLLSERLD KRHMVSEGNI 240 AGVESDEATD CEVLSGPRQR KAVDYIKLHD EMFGKNAVVS EQISEDEDWG PCRRKHRGKE 300 SNVESTVVTT GDNPGTSAEV KKKLSSGRSK RPIFRFPRHV VEKLRVVFAE NELPSRTIRD 360 NLSRQLGLES EKVNKWFKNA RYLALKARKK AKRLNASGPT VSKESVSRSG EDKSADPVTS 420 ENVAIEHELE SPGLKSSSRR KTAHLMASAF TRKRHKTALP PTNNKVLNAI SNVTMVKV

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MSINTYIMVM YIYLFSLSRE KIKPEKELER AKKQILKCKL GIREAICQLD GLSSVGHIED  60
SAVAPDGSVH HEHIICAKCK LREAFPDNDI VLCDGTCNCA FHQKCLDPPL STENIPPGDE  120
GWFCRYCKSK MEILEVTNAH LGTNFPLDSN WQDIFKEEAA LLDGKESLLC PEEEWPSDDS  180
EDVDYDPEGR EFHSPNSMSG SGSDSSVDAS SSNSLSSIED DVLLLSERLD KRHMVSEGNI  240
AGVESDEATD CEVLSGPRQR KAVDYIKLHD EMFGKNAVVS EQISEDEDWG PCRRKHRGKE  300
SNVESTVVTT GDNPGTSAEV KKKLSSGRSK RPIFRFPRHV VEKLRVVFAE NELPSRTIRD  360
NLSRQLGLES EKVNKWFKNA RYLALKARKK AKRLNASGPT VSKESVSRSG EDKSADPVTS  420
ENVAIEHELE SPGLKSSSRR KTAHLMASAF TRKRHKTALP PTNNKVLNAI SNVTMVKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-116	HB-PHD family protein